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gareth
commited on
Commit
·
b1a989d
1
Parent(s):
b93f644
feat: add agent parameters, more info labels
Browse files- app.py +10 -6
- ui/__init__.py +1 -1
- ui/functions/run_gym_env.py +59 -37
- ui/functions/run_single_population.py +4 -0
- ui/labels/disease_labels.py +11 -0
- ui/labels/healthcare_labels.py +8 -0
- ui/labels/population_labels.py +7 -1
- ui/labels/simulation_labels.py +18 -0
- ui/tabs/compare_pop_tab.py +1 -5
- ui/tabs/simple_example_tab.py +27 -11
- ui/tabs/single_pop_tab.py +30 -10
- ui/tabs/tab_builder.py +1 -5
- ui/tabs/with_agent_tab.py +185 -50
app.py
CHANGED
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@@ -7,14 +7,18 @@ from ui.tabs.with_agent_tab import WithAgentTab
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with gr.Blocks(theme=gr.themes.Glass()) as interface:
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gr.Markdown("**Social distancing sim**")
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gr.Markdown(
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"Graph based disease spread simulator. Uses https://github.com/garethjns/social-distancing-sim -
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)
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gr.Markdown(f"App version: {__version__} using `social-distancing-sim==0.11.2`")
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if __name__ == "__main__":
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interface.launch()
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with gr.Blocks(theme=gr.themes.Glass()) as interface:
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gr.Markdown("**Social distancing sim**")
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gr.Markdown(
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"""Graph based disease spread simulator. Uses https://github.com/garethjns/social-distancing-sim -
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see [README](https://github.com/garethjns/social-distancing-sim/blob/master/README.MD)
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for details.
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Individuals in the population are represented as graph nodes, with edges modelling connections
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allowing the possibility of disease transmission. between individuals.
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"""
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)
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gr.Markdown(f"App version: {__version__} using `social-distancing-sim==0.11.2`")
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SimpleExampleTab().build()
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SinglePopTab().build()
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WithAgentTab().build()
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if __name__ == "__main__":
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interface.launch()
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ui/__init__.py
CHANGED
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@@ -1 +1 @@
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__version__ = "0.
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__version__ = "0.3.0"
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ui/functions/run_gym_env.py
CHANGED
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@@ -12,18 +12,28 @@ from social_distancing_sim.templates.template_base import TemplateBase
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import gradio as gr
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class _EnvTemplate(TemplateBase):
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def build(self):
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seed = np.random.randint(int(1e6))
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return env.Environment(
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-
name="
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disease=env.Disease(
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name="COVID-19",
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virulence=0.01,
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@@ -50,38 +60,57 @@ class CustomEnv(GymEnv):
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template = _EnvTemplate()
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AGENT_TYPE_NAMES = Literal[
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"dummy",
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"distancing",
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"vaccination",
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"treatment",
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"masking",
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]
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AGENT_TYPE_MAP = {
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"dummy": agent.DummyAgent,
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"distancing": agent.DistancingPolicyAgent,
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"vaccination": agent.VaccinationAgent,
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"treatment": agent.TreatmentAgent,
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"masking": agent.MaskingAgent,
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}
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-
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def run_gym_env(
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name: str,
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steps: int,
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test_rate: float,
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agents: list[AGENT_TYPE_NAMES],
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-
n_actions: int
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-
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):
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-
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if agents is None:
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# Set no agent
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agents = ["dummy"]
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# Prepare agents
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prepared_agents = [AGENT_TYPE_MAP[a] for a in agents]
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# Prepare a custom environment
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env_name = f"SDS-CustomEnv{np.random.randint(int(2e6))}-v0"
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agent_class(
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actions_per_turn=adjusted_actions_per_turn,
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name=f"{agent_class.__name__} - {n_actions} actions",
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)
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for agent_class in prepared_agents
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]
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if n_agents == 1:
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)
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# Run all the prepared Sims
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-
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return pathlib.Path(f"{sim.save_path}/replay.gif")
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-
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if __name__ == "__main__":
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run_gym_env(
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name="test",
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steps=5,
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test_rate=1,
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agents=["dummy"],
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)
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import gradio as gr
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AGENT_TYPE_NAMES = Literal[
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"dummy",
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"distancing",
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"vaccination",
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"treatment",
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"masking",
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]
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AGENT_TYPE_MAP = {
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"dummy": agent.DummyAgent,
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"distancing": agent.DistancingPolicyAgent,
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"vaccination": agent.VaccinationAgent,
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"treatment": agent.TreatmentAgent,
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"masking": agent.MaskingAgent,
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}
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class _EnvTemplate(TemplateBase):
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def build(self):
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seed = np.random.randint(int(1e6))
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return env.Environment(
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name="custom_env",
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disease=env.Disease(
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name="COVID-19",
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virulence=0.01,
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template = _EnvTemplate()
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def run_gym_env(
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name: str,
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steps: int,
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test_rate: float,
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agents: list[AGENT_TYPE_NAMES],
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n_actions: int,
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isolate_start: int,
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reconnect_start: int,
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isolate_end: int,
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reconnect_end: int,
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vaccination_start: int,
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vaccination_end: int,
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treatment_start: int,
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treatment_end: int,
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masking_start: int,
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remove_mask_start: int,
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masking_end: int,
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remove_mask_end: int,
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progress=gr.Progress(track_tqdm=True), # noqa
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):
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if agents is None:
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# Set no agent
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agents = ["dummy"]
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start_step = "start_step"
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end_step = "end_step"
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agent_params = {
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"dummy": {start_step: 0, end_step: steps},
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"distancing": {
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start_step: {"isolate": isolate_start, "reconnect": reconnect_start},
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end_step: {"isolate": isolate_end, "reconnect": reconnect_end},
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},
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"vaccination": {
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start_step: {"vaccinate": vaccination_start},
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end_step: {"vaccinate": vaccination_end},
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},
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"treatment": {
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start_step: {"treat": treatment_start},
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end_step: {"treat": treatment_end},
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},
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"masking": {
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start_step: {
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"provide_mask": masking_start,
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"remove_mask": remove_mask_start,
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},
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end_step: {"provide_mask": masking_end, "remove_mask": remove_mask_end},
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},
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}
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# Prepare agents
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prepared_agents = [(AGENT_TYPE_MAP[a], agent_params[a]) for a in agents]
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# Prepare a custom environment
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env_name = f"SDS-CustomEnv{np.random.randint(int(2e6))}-v0"
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agent_class(
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actions_per_turn=adjusted_actions_per_turn,
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name=f"{agent_class.__name__} - {n_actions} actions",
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**agent_params,
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)
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for agent_class, agent_params in prepared_agents
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]
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if n_agents == 1:
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)
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# Run all the prepared Sims
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sim.run()
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sim.env.replay()
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return pathlib.Path(f"{sim.save_path}/replay.gif")
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ui/functions/run_single_population.py
CHANGED
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def run_single_population(
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name: str,
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steps: int,
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test_rate: float,
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community_n: int,
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community_size_mean: int,
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healthcare=healthcare,
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environment_plotting=environment_plotting,
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observation_space=observation_space,
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)
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# Turn logging on
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pop.log_to_file = True
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def run_single_population(
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name: str,
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steps: int,
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n_initial_infections: int,
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random_infection_chance: float,
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test_rate: float,
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community_n: int,
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community_size_mean: int,
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healthcare=healthcare,
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environment_plotting=environment_plotting,
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observation_space=observation_space,
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initial_infections=n_initial_infections,
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random_infection_chance=random_infection_chance,
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)
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# Turn logging on
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pop.log_to_file = True
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ui/labels/disease_labels.py
CHANGED
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TITLE = "**Disease parameters**"
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VIRULENCE = "Virulence"
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RECOVERY_RATE = "Recovery rate"
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IMMUNITY_MEAN = "Immunity after recovery"
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IMMUNITY_DECAY_MEAN = "Immunity decay rate"
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TITLE = "**Disease parameters**"
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VIRULENCE = "Virulence"
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VIRULENCE_INFO = (
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"Increased virulence makes the disease more likely to "
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"be transferred from an infected node to a connected uninfected node each turn."
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)
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RECOVERY_RATE = "Recovery rate"
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RECOVERY_RATE_INFO = "The likelihood an individual will recover at the end of the infection period, rather than dying."
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IMMUNITY_MEAN = "Immunity after recovery"
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IMMUNITY_MEAN_INFO = (
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"The average disease immunity gained by an individual that survives infection."
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)
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IMMUNITY_DECAY_MEAN = "Immunity decay rate"
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IMMUNITY_DECAY_MEAN_INFO = (
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"The average rate at which a individual's immunity decays after recovery."
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)
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ui/labels/healthcare_labels.py
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TITLE = "**Healthcare parameters**"
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CAPACITY = "Capacity"
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MAX_PENALTY = "Max penalty when over capacity"
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TITLE = "**Healthcare parameters**"
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CAPACITY = "Capacity"
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CAPACITY_INFO = (
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"The capacity of the healthcare system. When there are are more "
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"infected nodes requiring treatment than there is capacity for, chance of death is increased"
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)
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MAX_PENALTY = "Max penalty when over capacity"
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MAX_PENALTY_INFO = (
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"The maximum amount by which the chance of an infected node dying is "
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"increased when the healthcare system is over capacity."
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)
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ui/labels/population_labels.py
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TITLE = "**Population parameters**"
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COMMUNITY_N = "Number of communities"
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MEAN_COMMUNITY_SIZE = "Mean community size"
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COMMUNITY_P_IN = "Connection rate within communities"
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COMMUNITY_P_OUT = "Connection rate between communities"
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TITLE = "**Population parameters**"
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COMMUNITY_N = "Number of communities"
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COMMUNITY_N_INFO = (
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"Communities are cluster of graph nodes, with generally more connections "
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"between members than with non-members."
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)
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MEAN_COMMUNITY_SIZE = "Mean community size"
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MEAN_COMMUNITY_SIZE_INFO = (
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"Mean number of members (nodes) in each community (cluster of nodes)."
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)
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COMMUNITY_P_IN = "Connection rate within communities"
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COMMUNITY_P_OUT = "Connection rate between communities"
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ui/labels/simulation_labels.py
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TITLE = "**Simulation parameters**"
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OUTPUT_PATH = "Output path"
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STEPS = "Number of steps"
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TEST_RATE = "Test rate"
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TITLE = "**Simulation parameters**"
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OUTPUT_PATH = "Output path"
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STEPS = "Number of steps"
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STEPS_INFO = "The number of steps to run the simulation for"
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TEST_RATE = "Test rate"
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TEST_RATE_INFO = (
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"The rate of testing applied at each step - node disease state is not fully known "
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"without testing, whereas some state is always know (e.g. death)."
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"Testing is partly random, with infected nodes being tested more often than uninfected, "
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"based on the assumption that having symptoms causes an individual to actively seek testing."
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)
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TEST_RATE_EXTRA_INFO = (
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"When test rate == 1, the ground truth is fully observed and plotted. "
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"When it's <1, the ground truth graph is shown on the left, and the observed graph shown on the right."
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)
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INITIAL_INFECTIONS = "Number of initial infections"
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INITIAL_INFECTIONS_INFO = "The number of individuals randomly infected on step 0"
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RANDOM_INFECTION_CHANCE = "Random infection chance"
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RANDOM_INFECTION_CHANCE_INFO = (
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"Chance each step that an individual is randomly infected, even without being "
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"connected to another infected individual"
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)
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ui/tabs/compare_pop_tab.py
CHANGED
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@@ -1,8 +1,6 @@
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from dataclasses import dataclass
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from typing import Callable
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-
from gradio.components import FormComponent
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-
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import gradio as gr
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from ui.labels import simulation_labels
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from ui.tabs.tab_builder import ITabBuilder
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@@ -16,7 +14,7 @@ class ComparePopTab(ITabBuilder):
|
|
| 16 |
output_format = "gif"
|
| 17 |
button_label: str = "run"
|
| 18 |
|
| 19 |
-
def build(self) ->
|
| 20 |
with gr.Tab(self.tab_name):
|
| 21 |
inputs = []
|
| 22 |
with gr.Row():
|
|
@@ -29,5 +27,3 @@ class ComparePopTab(ITabBuilder):
|
|
| 29 |
|
| 30 |
button = gr.Button(self.button_label)
|
| 31 |
button.click(self.f, inputs=inputs, outputs=outputs)
|
| 32 |
-
|
| 33 |
-
return inputs, outputs, button
|
|
|
|
| 1 |
from dataclasses import dataclass
|
| 2 |
from typing import Callable
|
| 3 |
|
|
|
|
|
|
|
| 4 |
import gradio as gr
|
| 5 |
from ui.labels import simulation_labels
|
| 6 |
from ui.tabs.tab_builder import ITabBuilder
|
|
|
|
| 14 |
output_format = "gif"
|
| 15 |
button_label: str = "run"
|
| 16 |
|
| 17 |
+
def build(self) -> None:
|
| 18 |
with gr.Tab(self.tab_name):
|
| 19 |
inputs = []
|
| 20 |
with gr.Row():
|
|
|
|
| 27 |
|
| 28 |
button = gr.Button(self.button_label)
|
| 29 |
button.click(self.f, inputs=inputs, outputs=outputs)
|
|
|
|
|
|
ui/tabs/simple_example_tab.py
CHANGED
|
@@ -1,10 +1,7 @@
|
|
| 1 |
from dataclasses import dataclass
|
| 2 |
from typing import Callable
|
| 3 |
|
| 4 |
-
from gradio.components import FormComponent
|
| 5 |
-
|
| 6 |
import gradio as gr
|
| 7 |
-
from gradio import Image
|
| 8 |
from ui.functions.run_single_population import run_single_population
|
| 9 |
from ui.labels import population_labels, simulation_labels
|
| 10 |
from ui.tabs.tab_builder import ITabBuilder
|
|
@@ -16,9 +13,9 @@ class SimpleExampleTab(ITabBuilder):
|
|
| 16 |
tab_name = "Simple example"
|
| 17 |
default_output_path: str = "./gradio/simple-example/"
|
| 18 |
output_format = "gif"
|
| 19 |
-
button_label: str = "
|
| 20 |
|
| 21 |
-
def build(self) ->
|
| 22 |
|
| 23 |
with gr.Tab(self.tab_name):
|
| 24 |
inputs = []
|
|
@@ -42,6 +39,23 @@ class SimpleExampleTab(ITabBuilder):
|
|
| 42 |
step=1,
|
| 43 |
value=20,
|
| 44 |
label=simulation_labels.STEPS,
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 45 |
),
|
| 46 |
gr.Slider(
|
| 47 |
minimum=0.0,
|
|
@@ -49,6 +63,7 @@ class SimpleExampleTab(ITabBuilder):
|
|
| 49 |
step=0.01,
|
| 50 |
value=1.0,
|
| 51 |
label=simulation_labels.TEST_RATE,
|
|
|
|
| 52 |
interactive=False,
|
| 53 |
),
|
| 54 |
]
|
|
@@ -61,8 +76,9 @@ class SimpleExampleTab(ITabBuilder):
|
|
| 61 |
minimum=1,
|
| 62 |
maximum=100,
|
| 63 |
step=1,
|
| 64 |
-
value=
|
| 65 |
label=population_labels.COMMUNITY_N,
|
|
|
|
| 66 |
),
|
| 67 |
gr.Slider(
|
| 68 |
minimum=1,
|
|
@@ -70,13 +86,13 @@ class SimpleExampleTab(ITabBuilder):
|
|
| 70 |
step=1,
|
| 71 |
value=10,
|
| 72 |
label=population_labels.MEAN_COMMUNITY_SIZE,
|
|
|
|
| 73 |
),
|
| 74 |
]
|
| 75 |
)
|
| 76 |
|
| 77 |
-
|
| 78 |
-
|
| 79 |
-
button = gr.Button(self.button_label)
|
| 80 |
-
button.click(self.f, inputs=inputs, outputs=outputs)
|
| 81 |
|
| 82 |
-
|
|
|
|
|
|
| 1 |
from dataclasses import dataclass
|
| 2 |
from typing import Callable
|
| 3 |
|
|
|
|
|
|
|
| 4 |
import gradio as gr
|
|
|
|
| 5 |
from ui.functions.run_single_population import run_single_population
|
| 6 |
from ui.labels import population_labels, simulation_labels
|
| 7 |
from ui.tabs.tab_builder import ITabBuilder
|
|
|
|
| 13 |
tab_name = "Simple example"
|
| 14 |
default_output_path: str = "./gradio/simple-example/"
|
| 15 |
output_format = "gif"
|
| 16 |
+
button_label: str = "Run"
|
| 17 |
|
| 18 |
+
def build(self) -> None:
|
| 19 |
|
| 20 |
with gr.Tab(self.tab_name):
|
| 21 |
inputs = []
|
|
|
|
| 39 |
step=1,
|
| 40 |
value=20,
|
| 41 |
label=simulation_labels.STEPS,
|
| 42 |
+
info=simulation_labels.STEPS_INFO,
|
| 43 |
+
),
|
| 44 |
+
gr.Slider(
|
| 45 |
+
minimum=1,
|
| 46 |
+
maximum=100,
|
| 47 |
+
step=1,
|
| 48 |
+
value=10,
|
| 49 |
+
label=simulation_labels.INITIAL_INFECTIONS,
|
| 50 |
+
info=simulation_labels.INITIAL_INFECTIONS_INFO,
|
| 51 |
+
),
|
| 52 |
+
gr.Slider(
|
| 53 |
+
minimum=0,
|
| 54 |
+
maximum=1,
|
| 55 |
+
step=0.01,
|
| 56 |
+
value=0.02,
|
| 57 |
+
label=simulation_labels.RANDOM_INFECTION_CHANCE,
|
| 58 |
+
info=simulation_labels.RANDOM_INFECTION_CHANCE_INFO,
|
| 59 |
),
|
| 60 |
gr.Slider(
|
| 61 |
minimum=0.0,
|
|
|
|
| 63 |
step=0.01,
|
| 64 |
value=1.0,
|
| 65 |
label=simulation_labels.TEST_RATE,
|
| 66 |
+
info=f"{simulation_labels.TEST_RATE_INFO} {simulation_labels.TEST_RATE_EXTRA_INFO}",
|
| 67 |
interactive=False,
|
| 68 |
),
|
| 69 |
]
|
|
|
|
| 76 |
minimum=1,
|
| 77 |
maximum=100,
|
| 78 |
step=1,
|
| 79 |
+
value=6,
|
| 80 |
label=population_labels.COMMUNITY_N,
|
| 81 |
+
info=population_labels.COMMUNITY_N_INFO,
|
| 82 |
),
|
| 83 |
gr.Slider(
|
| 84 |
minimum=1,
|
|
|
|
| 86 |
step=1,
|
| 87 |
value=10,
|
| 88 |
label=population_labels.MEAN_COMMUNITY_SIZE,
|
| 89 |
+
info=population_labels.MEAN_COMMUNITY_SIZE_INFO,
|
| 90 |
),
|
| 91 |
]
|
| 92 |
)
|
| 93 |
|
| 94 |
+
with gr.Column():
|
| 95 |
+
outputs = [gr.Image(format=self.output_format)]
|
|
|
|
|
|
|
| 96 |
|
| 97 |
+
button = gr.Button(self.button_label)
|
| 98 |
+
button.click(self.f, inputs=inputs, outputs=outputs)
|
ui/tabs/single_pop_tab.py
CHANGED
|
@@ -1,9 +1,6 @@
|
|
| 1 |
from dataclasses import dataclass
|
| 2 |
from typing import Callable
|
| 3 |
|
| 4 |
-
from gradio.components.base import FormComponent
|
| 5 |
-
from gradio.components.image import Image
|
| 6 |
-
|
| 7 |
import gradio as gr
|
| 8 |
from ui.functions.run_single_population import run_single_population
|
| 9 |
from ui.labels import (
|
|
@@ -21,16 +18,15 @@ class SinglePopTab(ITabBuilder):
|
|
| 21 |
tab_name = "Passive population"
|
| 22 |
default_output_path: str = "./gradio/single-population-example/"
|
| 23 |
output_format = "gif"
|
| 24 |
-
button_label: str = "
|
|
|
|
|
|
|
| 25 |
|
| 26 |
-
def build(
|
| 27 |
-
self,
|
| 28 |
-
) -> tuple[list[FormComponent], list[Image], gr.Button]:
|
| 29 |
with gr.Tab(self.tab_name):
|
| 30 |
inputs = []
|
| 31 |
gr.Markdown(
|
| 32 |
"Run a customized simulation. "
|
| 33 |
-
"With Test rate
|
| 34 |
)
|
| 35 |
|
| 36 |
with gr.Row():
|
|
@@ -50,6 +46,23 @@ class SinglePopTab(ITabBuilder):
|
|
| 50 |
step=1,
|
| 51 |
value=50,
|
| 52 |
label=simulation_labels.STEPS,
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 53 |
),
|
| 54 |
gr.Slider(
|
| 55 |
minimum=0.0,
|
|
@@ -57,6 +70,7 @@ class SinglePopTab(ITabBuilder):
|
|
| 57 |
step=0.01,
|
| 58 |
value=0.25,
|
| 59 |
label=simulation_labels.TEST_RATE,
|
|
|
|
| 60 |
),
|
| 61 |
]
|
| 62 |
)
|
|
@@ -70,6 +84,7 @@ class SinglePopTab(ITabBuilder):
|
|
| 70 |
step=1,
|
| 71 |
value=50,
|
| 72 |
label=population_labels.COMMUNITY_N,
|
|
|
|
| 73 |
),
|
| 74 |
gr.Slider(
|
| 75 |
minimum=1,
|
|
@@ -77,6 +92,7 @@ class SinglePopTab(ITabBuilder):
|
|
| 77 |
step=1,
|
| 78 |
value=15,
|
| 79 |
label=population_labels.MEAN_COMMUNITY_SIZE,
|
|
|
|
| 80 |
),
|
| 81 |
gr.Slider(
|
| 82 |
minimum=-0.0,
|
|
@@ -106,6 +122,7 @@ class SinglePopTab(ITabBuilder):
|
|
| 106 |
step=0.001,
|
| 107 |
value=0.005,
|
| 108 |
label=disease_labels.VIRULENCE,
|
|
|
|
| 109 |
),
|
| 110 |
gr.Slider(
|
| 111 |
minimum=-0.0,
|
|
@@ -113,6 +130,7 @@ class SinglePopTab(ITabBuilder):
|
|
| 113 |
step=0.1,
|
| 114 |
value=0.99,
|
| 115 |
label=disease_labels.RECOVERY_RATE,
|
|
|
|
| 116 |
),
|
| 117 |
gr.Slider(
|
| 118 |
minimum=-0.0,
|
|
@@ -120,6 +138,7 @@ class SinglePopTab(ITabBuilder):
|
|
| 120 |
step=0.1,
|
| 121 |
value=0.66,
|
| 122 |
label=disease_labels.IMMUNITY_MEAN,
|
|
|
|
| 123 |
),
|
| 124 |
gr.Slider(
|
| 125 |
minimum=-0.0,
|
|
@@ -127,6 +146,7 @@ class SinglePopTab(ITabBuilder):
|
|
| 127 |
step=0.1,
|
| 128 |
value=0.1,
|
| 129 |
label=disease_labels.IMMUNITY_DECAY_MEAN,
|
|
|
|
| 130 |
),
|
| 131 |
]
|
| 132 |
)
|
|
@@ -140,6 +160,7 @@ class SinglePopTab(ITabBuilder):
|
|
| 140 |
step=1,
|
| 141 |
value=200,
|
| 142 |
label=healthcare_labels.CAPACITY,
|
|
|
|
| 143 |
),
|
| 144 |
gr.Slider(
|
| 145 |
minimum=0.0,
|
|
@@ -147,6 +168,7 @@ class SinglePopTab(ITabBuilder):
|
|
| 147 |
step=0.01,
|
| 148 |
value=0.5,
|
| 149 |
label=healthcare_labels.MAX_PENALTY,
|
|
|
|
| 150 |
),
|
| 151 |
]
|
| 152 |
)
|
|
@@ -154,5 +176,3 @@ class SinglePopTab(ITabBuilder):
|
|
| 154 |
outputs = [gr.Image(format=self.output_format)]
|
| 155 |
button = gr.Button(self.button_label)
|
| 156 |
button.click(self.f, inputs=inputs, outputs=outputs)
|
| 157 |
-
|
| 158 |
-
return inputs, outputs, button
|
|
|
|
| 1 |
from dataclasses import dataclass
|
| 2 |
from typing import Callable
|
| 3 |
|
|
|
|
|
|
|
|
|
|
| 4 |
import gradio as gr
|
| 5 |
from ui.functions.run_single_population import run_single_population
|
| 6 |
from ui.labels import (
|
|
|
|
| 18 |
tab_name = "Passive population"
|
| 19 |
default_output_path: str = "./gradio/single-population-example/"
|
| 20 |
output_format = "gif"
|
| 21 |
+
button_label: str = "Run"
|
| 22 |
+
|
| 23 |
+
def build(self) -> None:
|
| 24 |
|
|
|
|
|
|
|
|
|
|
| 25 |
with gr.Tab(self.tab_name):
|
| 26 |
inputs = []
|
| 27 |
gr.Markdown(
|
| 28 |
"Run a customized simulation. "
|
| 29 |
+
"With Test rate <= 1.0, results will show both ground truth and observed space."
|
| 30 |
)
|
| 31 |
|
| 32 |
with gr.Row():
|
|
|
|
| 46 |
step=1,
|
| 47 |
value=50,
|
| 48 |
label=simulation_labels.STEPS,
|
| 49 |
+
info=simulation_labels.STEPS_INFO,
|
| 50 |
+
),
|
| 51 |
+
gr.Slider(
|
| 52 |
+
minimum=1,
|
| 53 |
+
maximum=100,
|
| 54 |
+
step=1,
|
| 55 |
+
value=2,
|
| 56 |
+
label=simulation_labels.INITIAL_INFECTIONS,
|
| 57 |
+
info=simulation_labels.INITIAL_INFECTIONS_INFO,
|
| 58 |
+
),
|
| 59 |
+
gr.Slider(
|
| 60 |
+
minimum=0,
|
| 61 |
+
maximum=1,
|
| 62 |
+
step=0.01,
|
| 63 |
+
value=0.02,
|
| 64 |
+
label=simulation_labels.RANDOM_INFECTION_CHANCE,
|
| 65 |
+
info=simulation_labels.RANDOM_INFECTION_CHANCE_INFO,
|
| 66 |
),
|
| 67 |
gr.Slider(
|
| 68 |
minimum=0.0,
|
|
|
|
| 70 |
step=0.01,
|
| 71 |
value=0.25,
|
| 72 |
label=simulation_labels.TEST_RATE,
|
| 73 |
+
info=simulation_labels.TEST_RATE_INFO,
|
| 74 |
),
|
| 75 |
]
|
| 76 |
)
|
|
|
|
| 84 |
step=1,
|
| 85 |
value=50,
|
| 86 |
label=population_labels.COMMUNITY_N,
|
| 87 |
+
info=population_labels.COMMUNITY_N_INFO,
|
| 88 |
),
|
| 89 |
gr.Slider(
|
| 90 |
minimum=1,
|
|
|
|
| 92 |
step=1,
|
| 93 |
value=15,
|
| 94 |
label=population_labels.MEAN_COMMUNITY_SIZE,
|
| 95 |
+
info=population_labels.MEAN_COMMUNITY_SIZE_INFO,
|
| 96 |
),
|
| 97 |
gr.Slider(
|
| 98 |
minimum=-0.0,
|
|
|
|
| 122 |
step=0.001,
|
| 123 |
value=0.005,
|
| 124 |
label=disease_labels.VIRULENCE,
|
| 125 |
+
info=disease_labels.VIRULENCE_INFO,
|
| 126 |
),
|
| 127 |
gr.Slider(
|
| 128 |
minimum=-0.0,
|
|
|
|
| 130 |
step=0.1,
|
| 131 |
value=0.99,
|
| 132 |
label=disease_labels.RECOVERY_RATE,
|
| 133 |
+
info=disease_labels.RECOVERY_RATE_INFO,
|
| 134 |
),
|
| 135 |
gr.Slider(
|
| 136 |
minimum=-0.0,
|
|
|
|
| 138 |
step=0.1,
|
| 139 |
value=0.66,
|
| 140 |
label=disease_labels.IMMUNITY_MEAN,
|
| 141 |
+
info=disease_labels.IMMUNITY_MEAN_INFO,
|
| 142 |
),
|
| 143 |
gr.Slider(
|
| 144 |
minimum=-0.0,
|
|
|
|
| 146 |
step=0.1,
|
| 147 |
value=0.1,
|
| 148 |
label=disease_labels.IMMUNITY_DECAY_MEAN,
|
| 149 |
+
info=disease_labels.IMMUNITY_DECAY_MEAN_INFO,
|
| 150 |
),
|
| 151 |
]
|
| 152 |
)
|
|
|
|
| 160 |
step=1,
|
| 161 |
value=200,
|
| 162 |
label=healthcare_labels.CAPACITY,
|
| 163 |
+
info=healthcare_labels.CAPACITY_INFO,
|
| 164 |
),
|
| 165 |
gr.Slider(
|
| 166 |
minimum=0.0,
|
|
|
|
| 168 |
step=0.01,
|
| 169 |
value=0.5,
|
| 170 |
label=healthcare_labels.MAX_PENALTY,
|
| 171 |
+
info=healthcare_labels.MAX_PENALTY_INFO,
|
| 172 |
),
|
| 173 |
]
|
| 174 |
)
|
|
|
|
| 176 |
outputs = [gr.Image(format=self.output_format)]
|
| 177 |
button = gr.Button(self.button_label)
|
| 178 |
button.click(self.f, inputs=inputs, outputs=outputs)
|
|
|
|
|
|
ui/tabs/tab_builder.py
CHANGED
|
@@ -1,15 +1,11 @@
|
|
| 1 |
import abc
|
| 2 |
from typing import Callable
|
| 3 |
|
| 4 |
-
from gradio.components import FormComponent
|
| 5 |
-
|
| 6 |
-
import gradio as gr
|
| 7 |
-
|
| 8 |
|
| 9 |
class ITabBuilder(abc.ABC):
|
| 10 |
f: Callable
|
| 11 |
name: str
|
| 12 |
|
| 13 |
@abc.abstractmethod
|
| 14 |
-
def build(self) ->
|
| 15 |
"""Compose the tab components."""
|
|
|
|
| 1 |
import abc
|
| 2 |
from typing import Callable
|
| 3 |
|
|
|
|
|
|
|
|
|
|
|
|
|
| 4 |
|
| 5 |
class ITabBuilder(abc.ABC):
|
| 6 |
f: Callable
|
| 7 |
name: str
|
| 8 |
|
| 9 |
@abc.abstractmethod
|
| 10 |
+
def build(self) -> None:
|
| 11 |
"""Compose the tab components."""
|
ui/tabs/with_agent_tab.py
CHANGED
|
@@ -1,8 +1,6 @@
|
|
| 1 |
from dataclasses import dataclass
|
| 2 |
from typing import Callable
|
| 3 |
|
| 4 |
-
from gradio.components import FormComponent
|
| 5 |
-
|
| 6 |
import gradio as gr
|
| 7 |
from ui.functions.run_gym_env import run_gym_env
|
| 8 |
from ui.labels import simulation_labels
|
|
@@ -15,36 +13,39 @@ class WithAgentTab(ITabBuilder):
|
|
| 15 |
tab_name = "With agent(s)"
|
| 16 |
default_output_path: str = "./gradio/agent-example/"
|
| 17 |
output_format = "gif"
|
| 18 |
-
button_label: str = "
|
| 19 |
|
| 20 |
def build(
|
| 21 |
self,
|
| 22 |
-
) ->
|
| 23 |
-
|
| 24 |
with gr.Tab(self.tab_name):
|
| 25 |
-
inputs = []
|
| 26 |
gr.Markdown(
|
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"
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)
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with gr.Row():
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with gr.Column():
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gr.Markdown(simulation_labels.TITLE)
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inputs.extend(
|
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[
|
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-
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-
value=self.default_output_path,
|
| 39 |
-
label=simulation_labels.OUTPUT_PATH,
|
| 40 |
-
),
|
| 41 |
-
gr.Slider(
|
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-
minimum=5,
|
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-
maximum=200,
|
| 44 |
-
step=1,
|
| 45 |
-
value=100,
|
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-
label=simulation_labels.STEPS,
|
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-
),
|
| 48 |
gr.Slider(
|
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minimum=0.0,
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maximum=1.0,
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@@ -56,34 +57,168 @@ class WithAgentTab(ITabBuilder):
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| 88 |
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| 89 |
-
|
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|
|
| 1 |
from dataclasses import dataclass
|
| 2 |
from typing import Callable
|
| 3 |
|
|
|
|
|
|
|
| 4 |
import gradio as gr
|
| 5 |
from ui.functions.run_gym_env import run_gym_env
|
| 6 |
from ui.labels import simulation_labels
|
|
|
|
| 13 |
tab_name = "With agent(s)"
|
| 14 |
default_output_path: str = "./gradio/agent-example/"
|
| 15 |
output_format = "gif"
|
| 16 |
+
button_label: str = "Run"
|
| 17 |
|
| 18 |
def build(
|
| 19 |
self,
|
| 20 |
+
) -> None:
|
| 21 |
+
inputs = []
|
| 22 |
with gr.Tab(self.tab_name):
|
|
|
|
| 23 |
gr.Markdown(
|
| 24 |
+
"""
|
| 25 |
+
Run a simulation with fixed parameters and optional agents.
|
|
|
|
| 26 |
|
| 27 |
+
Agents have fixed efficiency, and number of actions they perform each turn can be configured.
|
| 28 |
+
"""
|
| 29 |
+
)
|
| 30 |
with gr.Row():
|
| 31 |
with gr.Column():
|
| 32 |
gr.Markdown(simulation_labels.TITLE)
|
| 33 |
+
inputs.append(
|
| 34 |
+
gr.Text(
|
| 35 |
+
value=self.default_output_path,
|
| 36 |
+
label=simulation_labels.OUTPUT_PATH,
|
| 37 |
+
)
|
| 38 |
+
)
|
| 39 |
+
steps_slider_component = gr.Slider(
|
| 40 |
+
minimum=5,
|
| 41 |
+
maximum=200,
|
| 42 |
+
step=1,
|
| 43 |
+
value=100,
|
| 44 |
+
label=simulation_labels.STEPS,
|
| 45 |
+
)
|
| 46 |
inputs.extend(
|
| 47 |
[
|
| 48 |
+
steps_slider_component,
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 49 |
gr.Slider(
|
| 50 |
minimum=0.0,
|
| 51 |
maximum=1.0,
|
|
|
|
| 57 |
]
|
| 58 |
)
|
| 59 |
|
| 60 |
+
with gr.Accordion("Agents"):
|
| 61 |
+
agents_selection_component = gr.Checkboxgroup(
|
| 62 |
+
choices=[
|
| 63 |
+
("Distancing", "distancing"),
|
| 64 |
+
("Vaccination", "vaccination"),
|
| 65 |
+
("Treatment", "treatment"),
|
| 66 |
+
("Masking", "masking"),
|
| 67 |
+
],
|
| 68 |
+
value=["distancing"],
|
| 69 |
+
label="Enabled agents",
|
| 70 |
+
)
|
| 71 |
+
inputs.extend(
|
| 72 |
+
[
|
| 73 |
+
agents_selection_component,
|
| 74 |
+
gr.Slider(
|
| 75 |
+
minimum=0,
|
| 76 |
+
maximum=20,
|
| 77 |
+
step=1,
|
| 78 |
+
value=6,
|
| 79 |
+
label="Total number of actions allowed per turn",
|
| 80 |
+
info="Number of actions per turn, split equally between active agents (rounded down where required.)",
|
| 81 |
+
interactive=True,
|
| 82 |
+
),
|
| 83 |
+
]
|
| 84 |
+
)
|
| 85 |
+
|
| 86 |
+
with gr.Group():
|
| 87 |
+
gr.Markdown(
|
| 88 |
+
"""
|
| 89 |
+
**Distancing agent params**
|
| 90 |
+
|
| 91 |
+
The distancing agent disconnects nodes wth 95% efficiency."""
|
| 92 |
+
)
|
| 93 |
+
inputs.extend(
|
| 94 |
+
[
|
| 95 |
+
gr.Slider(
|
| 96 |
+
label="Start isolating on step",
|
| 97 |
+
minimum=steps_slider_component.minimum,
|
| 98 |
+
value=5,
|
| 99 |
+
maximum=steps_slider_component.maximum,
|
| 100 |
+
interactive=True,
|
| 101 |
+
),
|
| 102 |
+
gr.Slider(
|
| 103 |
+
label="Stop isolating on step",
|
| 104 |
+
minimum=steps_slider_component.minimum,
|
| 105 |
+
value=50,
|
| 106 |
+
maximum=steps_slider_component.maximum,
|
| 107 |
+
interactive=True,
|
| 108 |
+
),
|
| 109 |
+
gr.Slider(
|
| 110 |
+
label="Start reconnecting on step",
|
| 111 |
+
minimum=steps_slider_component.minimum,
|
| 112 |
+
value=40,
|
| 113 |
+
maximum=steps_slider_component.maximum,
|
| 114 |
+
interactive=True,
|
| 115 |
+
),
|
| 116 |
+
gr.Slider(
|
| 117 |
+
label="Stop reconnecting on step",
|
| 118 |
+
minimum=steps_slider_component.minimum,
|
| 119 |
+
value=steps_slider_component.maximum,
|
| 120 |
+
maximum=steps_slider_component.maximum,
|
| 121 |
+
interactive=True,
|
| 122 |
+
),
|
| 123 |
+
]
|
| 124 |
+
)
|
| 125 |
+
|
| 126 |
+
with gr.Group():
|
| 127 |
+
gr.Markdown(
|
| 128 |
+
"""
|
| 129 |
+
**Vaccination agent params**
|
| 130 |
|
| 131 |
+
The vaccination agent adds 95% immunity to targeted uninfected nodes."""
|
| 132 |
+
)
|
| 133 |
+
inputs.extend(
|
| 134 |
+
[
|
| 135 |
+
gr.Slider(
|
| 136 |
+
label="Start vaccinating on step",
|
| 137 |
+
minimum=steps_slider_component.minimum,
|
| 138 |
+
value=5,
|
| 139 |
+
maximum=steps_slider_component.maximum,
|
| 140 |
+
interactive=True,
|
| 141 |
+
),
|
| 142 |
+
gr.Slider(
|
| 143 |
+
label="Stop vaccinating on step",
|
| 144 |
+
minimum=steps_slider_component.minimum,
|
| 145 |
+
value=50,
|
| 146 |
+
maximum=steps_slider_component.maximum,
|
| 147 |
+
interactive=True,
|
| 148 |
+
),
|
| 149 |
+
]
|
| 150 |
+
)
|
| 151 |
+
|
| 152 |
+
with gr.Group():
|
| 153 |
+
gr.Markdown(
|
| 154 |
+
"""
|
| 155 |
+
**Vaccination agent params**
|
| 156 |
+
|
| 157 |
+
"The treatment agent treats infected nodes with 60% immediate recovery,
|
| 158 |
+
and a boost to recovery rate otherwise."""
|
| 159 |
+
)
|
| 160 |
+
inputs.extend(
|
| 161 |
+
[
|
| 162 |
+
gr.Slider(
|
| 163 |
+
label="Start treating on step",
|
| 164 |
+
minimum=steps_slider_component.minimum,
|
| 165 |
+
value=5,
|
| 166 |
+
maximum=steps_slider_component.maximum,
|
| 167 |
+
interactive=True,
|
| 168 |
+
),
|
| 169 |
+
gr.Slider(
|
| 170 |
+
label="Stop treating on step",
|
| 171 |
+
minimum=steps_slider_component.minimum,
|
| 172 |
+
value=50,
|
| 173 |
+
maximum=steps_slider_component.maximum,
|
| 174 |
+
interactive=True,
|
| 175 |
+
),
|
| 176 |
+
]
|
| 177 |
+
)
|
| 178 |
+
|
| 179 |
+
with gr.Group():
|
| 180 |
+
gr.Markdown(
|
| 181 |
+
"""
|
| 182 |
+
**Masking agent params**
|
| 183 |
+
|
| 184 |
+
The masking agent gives nodes masks (indicated by circles in plot),
|
| 185 |
+
which reduces disease spread to/from the node by 25%."""
|
| 186 |
+
)
|
| 187 |
+
inputs.extend(
|
| 188 |
+
[
|
| 189 |
+
gr.Slider(
|
| 190 |
+
label="Start masking on step",
|
| 191 |
+
minimum=steps_slider_component.minimum,
|
| 192 |
+
value=5,
|
| 193 |
+
maximum=steps_slider_component.maximum,
|
| 194 |
+
interactive=True,
|
| 195 |
+
),
|
| 196 |
+
gr.Slider(
|
| 197 |
+
label="Stop masking on step",
|
| 198 |
+
minimum=steps_slider_component.minimum,
|
| 199 |
+
value=50,
|
| 200 |
+
maximum=steps_slider_component.maximum,
|
| 201 |
+
interactive=True,
|
| 202 |
+
),
|
| 203 |
+
gr.Slider(
|
| 204 |
+
label="Start removing masks on step",
|
| 205 |
+
minimum=steps_slider_component.minimum,
|
| 206 |
+
value=40,
|
| 207 |
+
maximum=steps_slider_component.maximum,
|
| 208 |
+
interactive=True,
|
| 209 |
+
),
|
| 210 |
+
gr.Slider(
|
| 211 |
+
label="Stop removing masks on step",
|
| 212 |
+
minimum=steps_slider_component.minimum,
|
| 213 |
+
value=steps_slider_component.maximum,
|
| 214 |
+
maximum=steps_slider_component.maximum,
|
| 215 |
+
interactive=True,
|
| 216 |
+
),
|
| 217 |
+
]
|
| 218 |
+
)
|
| 219 |
+
|
| 220 |
+
with gr.Column():
|
| 221 |
+
outputs = [gr.Image(format=self.output_format)]
|
| 222 |
|
| 223 |
+
button = gr.Button(self.button_label)
|
| 224 |
+
button.click(self.f, inputs=inputs, outputs=outputs)
|