celldetection / util.py
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from imageio.v2 import imread as _imread
from shutil import copy2
import tifffile as tif
__all__ = ['imread', 'imsave', 'copy_skimage_data']
def imread(filename):
if filename.split('.')[-1] in ('tiff', 'tif'):
return tif.imread(filename)
return _imread(filename)
def imsave(filename, img, compression="zlib"):
tif.imwrite(filename, img, compression=compression)
def copy_skimage_data(dst='examples'):
from skimage import data
from os import makedirs
from os.path import dirname, join, isfile
from glob import glob
makedirs(dst, exist_ok=True)
for f in glob(join(dirname(data.__file__), '*.png')):
copy2(f, dst)