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epochs-demos
commited on
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372e060
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Parent(s):
498def6
Update pages/Brain.py
Browse files- pages/Brain.py +49 -29
pages/Brain.py
CHANGED
@@ -19,6 +19,8 @@ text_model = BioGptForCausalLM.from_pretrained("microsoft/biogpt")
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tokenizer = BioGptTokenizer.from_pretrained("microsoft/biogpt")
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labels_path = 'brain_labels.json'
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from captum.attr import DeepLift , visualization
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with open(labels_path) as json_data:
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idx_to_labels = json.load(json_data)
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@@ -86,7 +88,51 @@ class FineTuneModel(pl.LightningModule):
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st.markdown("<h1 style='text-align: center; '>Brain Tumor Diagnosis</h1>",unsafe_allow_html=True)
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@@ -125,32 +171,6 @@ with st.container():
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input_text = f"Patient has {predicted_label} and is advised to take the following medicines:"
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with st.spinner('Generating Text'):
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generator(input_text, max_length=300, do_sample=True, top_k=50, top_p=0.95, num_return_sequences=1)
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st.markdown(generator(input_text, max_length=300, do_sample=True, top_k=50, top_p=0.95, num_return_sequences=1)[0]['generated_text'])
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else:
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st.success("Please upload an image file 🧠")
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## Model Explainibilty Dashboard using Captum
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tokenizer = BioGptTokenizer.from_pretrained("microsoft/biogpt")
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labels_path = 'brain_labels.json'
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from captum.attr import DeepLift , visualization
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import os
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import base64
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with open(labels_path) as json_data:
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idx_to_labels = json.load(json_data)
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# Get the current working directory
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current_dir = os.getcwd()
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# Construct the absolute path to the logo.png file
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logo_path = os.path.join(current_dir, "logo.png")
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with open(logo_path, "rb") as f:
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image_data = f.read()
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image_base64 = base64.b64encode(image_data).decode("utf-8")
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# Add custom CSS for the header
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header_css = """
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<style>
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.header {
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display: flex;
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align-items: center;
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justify-content: center;
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padding: 20px;
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font-size: 18px;
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}
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.header img {
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margin-right: 10px;
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width: 80px;
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height: 50px;
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}
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.header p {
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font-size: 14px;
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}
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</style>
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"""
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# Render the custom CSS
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st.markdown(header_css, unsafe_allow_html=True)
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# Render the header
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header_html = f"""
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<div class="header">
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<img src='data:image/jpeg;base64,{image_base64}' alt="Logo"/>
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<p>Disclaimer: This web app is for demonstration purposes only and not intended for commercial use. Contact: contact@1001epochs.co.uk for full solution.</p>
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</div>
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"""
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st.markdown(header_html, unsafe_allow_html=True)
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st.markdown("<h1 style='text-align: center; '>Brain Tumor Diagnosis</h1>",unsafe_allow_html=True)
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input_text = f"Patient has {predicted_label} and is advised to take the following medicines:"
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with st.spinner('Generating Text'):
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generator(input_text, max_length=300, do_sample=True, top_k=50, top_p=0.95, num_return_sequences=1)
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st.markdown(generator(input_text, max_length=300, do_sample=True, top_k=50, top_p=0.95, num_return_sequences=1)[0]['generated_text'])
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else:
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st.success("Please upload an image file 🧠")
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