update causal gene discovery patients

gene_discovery_scores_attn.csv

@@ -1,57 +1,79 @@
 patient_id,phenotypes,degrees,attention
-UDN-P2,Abnormality of vision,111,0.1178910732269287
-UDN-P2,Global developmental delay,1330,0.1363666206598281
-UDN-P2,Abnormality of the liver,65,0.0964500233530998
-UDN-P2,Failure to thrive in infancy,1,0.1844952553510666
-UDN-P2,Exocrine pancreatic insufficiency,4,0.0708952322602272
-UDN-P2,Abdominal pain,257,0.0660589486360549
-UDN-P2,Asthma,177,0.0678283423185348
-UDN-P2,Duodenal atresia,34,0.0732858255505561
-UDN-P2,Intestinal malrotation,91,0.0733114182949066
-UDN-P2,Gastroparesis,23,0.1134173870086669
-UDN-P1,Thick lower lip vermilion,1,0.0254656299948692
-UDN-P1,Hydrocephalus,304,0.0226140450686216
-UDN-P1,Microcephaly,1006,0.0317770205438137
-UDN-P1,Low anterior hairline,4,0.0236586183309555
-UDN-P1,Mandibular prognathia,6,0.0236049313098192
-UDN-P1,Alacrima,1,0.0144500378519296
-UDN-P1,Thick eyebrow,8,0.0233250595629215
-UDN-P1,Exotropia,94,0.0174672622233629
-UDN-P1,Synophrys,3,0.0241911858320236
-UDN-P1,Delayed eruption of teeth,131,0.0234366580843925
-UDN-P1,Abnormal sternum morphology,51,0.0120793534442782
-UDN-P1,Hypertension,278,0.0188926625996828
-UDN-P1,Hypotonia,911,0.03265380859375
-UDN-P1,Global developmental delay,1330,0.027355071157217
-UDN-P1,Dystonia,360,0.0240448117256164
-UDN-P1,Absent speech,1,0.022760335355997
-UDN-P1,Failure to thrive,648,0.0337891578674316
-UDN-P1,Growth delay,435,0.0274257939308881
-UDN-P1,Pancreatitis,63,0.0125568015500903
-UDN-P1,Overlapping toe,2,0.0273327771574258
-UDN-P1,Constipation,270,0.0161661840975284
-UDN-P1,Gastroesophageal reflux,268,0.0214648023247718
-UDN-P1,Cerebral atrophy,231,0.0250347331166267
-UDN-P1,Hypoplasia of the corpus callosum,332,0.0269252881407737
-UDN-P1,Respiratory insufficiency,325,0.0316686779260635
-UDN-P1,Ventriculomegaly,409,0.0280382838100194
-UDN-P1,Coarse hair,2,0.024032786488533
-UDN-P1,Drooling,85,0.0192697960883378
-UDN-P1,Febrile seizure (within the age range of 3 months to 6 years),62,0.0105393650010228
-UDN-P1,Developmental regression,203,0.0249004419893026
-UDN-P1,Abnormal cerebral white matter morphology,76,0.0189827494323253
-UDN-P1,Short stature,1167,0.036681056022644
-UDN-P1,Chronic pancreatitis,1,0.0087832231074571
-UDN-P1,Premature loss of primary teeth,1,0.0137059595435857
-UDN-P1,Premature loss of teeth,32,0.0200045183300972
-UDN-P1,Chronic lung disease,1,0.030693894252181
-UDN-P1,Moderate sensorineural hearing impairment,1,0.0128651773557066
-UDN-P1,Laryngeal cleft,1,0.0062378644943237
-UDN-P1,Laryngeal calcification,1,0.0187820736318826
-UDN-P1,Low hanging columella,2,0.0193525701761245
-UDN-P1,Prominent eyelashes,1,0.0317739509046077
-UDN-P1,Gastrostomy tube feeding in infancy,1,0.0312498826533556
-UDN-P1,Midface retrusion,1,0.0272352565079927
-UDN-P1,Premature adrenarche,1,0.0155880162492394
-UDN-P1,T2 hypointense brainstem,1,0.0003417030384298
-UDN-P1,T2 hypointense basal ganglia,49,0.0108007565140724
+UDN-P2,Simple febrile seizure,1,0.1821544915437698
+UDN-P2,Autism,437,0.0756760388612747
+UDN-P2,Muscular hypotonia of the trunk,144,0.071331113576889
+UDN-P2,Abnormal mitochondria in muscle tissue,2,0.0498904511332511
+UDN-P2,Downturned corners of mouth,10,0.048310425132513
+UDN-P2,Abnormality of coordination,9,0.0462948195636272
+UDN-P2,Developmental regression,203,0.0459261648356914
+UDN-P2,Delayed speech and language development,512,0.0430936887860298
+UDN-P2,Narrow forehead,10,0.0407348088920116
+UDN-P2,HP:0007930,502,0.0347550734877586
+UDN-P2,Tapered finger,1,0.0334602817893028
+UDN-P2,Astigmatism,135,0.0263907611370086
+UDN-P2,Esotropia,121,0.0251658950001001
+UDN-P2,Abnormal muscle tone,16,0.0247820187360048
+UDN-P2,Global developmental delay,1330,0.0219300687313079
+UDN-P2,Apraxia,47,0.0208667255938053
+UDN-P2,Obesity,444,0.0207838024944067
+UDN-P2,Brachydactyly,389,0.019670233130455
+UDN-P2,Hypotelorism,2,0.019594058394432
+UDN-P2,HP:0011398,911,0.0195294171571731
+UDN-P2,HP:0006877,1425,0.0191374626010656
+UDN-P2,Incoordination,62,0.0164797715842723
+UDN-P2,Poor coordination,31,0.0149749955162405
+UDN-P2,Speech apraxia,1,0.0129641536623239
+UDN-P2,Obstructive sleep apnea,58,0.0122253587469458
+UDN-P2,Sensory impairment,75,0.0113796005025506
+UDN-P2,Cow milk allergy,1,0.0096608363091945
+UDN-P2,Asthma,177,0.0092268791049718
+UDN-P2,Muscle weakness,392,0.0088263200595974
+UDN-P2,Delayed gross motor development,100,0.0087120095267891
+UDN-P2,Polyhydramnios,213,0.0033694496378302
+UDN-P2,Increased body weight,126,0.0027028108015656
+UDN-P1,Laryngeal calcification,1,0.1418475359678268
+UDN-P1,Thick lower lip vermilion,1,0.1197952106595039
+UDN-P1,T2 hypointense basal ganglia,49,0.0538605600595474
+UDN-P1,Premature loss of teeth,32,0.0516010001301765
+UDN-P1,Coarse hair,2,0.051049243658781
+UDN-P1,Febrile seizure (within the age range of 3 months to 6 years),62,0.0479606948792934
+UDN-P1,Delayed eruption of teeth,131,0.039957158267498
+UDN-P1,Premature adrenarche,1,0.0387096293270587
+UDN-P1,Abnormal sternum morphology,51,0.0261683445423841
+UDN-P1,Low anterior hairline,4,0.0244181603193283
+UDN-P1,Hypoplasia of the corpus callosum,332,0.0241546090692281
+UDN-P1,Moderate sensorineural hearing impairment,1,0.0214006286114454
+UDN-P1,Premature loss of primary teeth,1,0.0209346357733011
+UDN-P1,Ventriculomegaly,409,0.0208190511912107
+UDN-P1,Thick eyebrow,8,0.0203704535961151
+UDN-P1,Prominent eyelashes,1,0.019628481939435
+UDN-P1,Mandibular prognathia,6,0.0188951771706342
+UDN-P1,Absent speech,1,0.0186286736279726
+UDN-P1,Gastrostomy tube feeding in infancy,1,0.015972651541233
+UDN-P1,Developmental regression,203,0.0159714873880147
+UDN-P1,Synophrys,3,0.0143400756642222
+UDN-P1,Hypertension,278,0.0141365332528948
+UDN-P1,Cerebral atrophy,231,0.0134260654449462
+UDN-P1,Low hanging columella,2,0.0127169173210859
+UDN-P1,Microcephaly,1006,0.0122076477855443
+UDN-P1,Short stature,1167,0.0120520433411002
+UDN-P1,Constipation,270,0.0114372400566935
+UDN-P1,Failure to thrive,648,0.0112343775108456
+UDN-P1,Growth delay,435,0.0110889645293354
+UDN-P1,HP:0040199,1,0.0105574298650026
+UDN-P1,Hydrocephalus,304,0.0098500475287437
+UDN-P1,Alacrima,1,0.0098224878311157
+UDN-P1,Chronic pancreatitis,1,0.007521613035351
+UDN-P1,HP:0008033,94,0.0067969802767038
+UDN-P1,Global developmental delay,1330,0.0066903717815876
+UDN-P1,HP:0011398,911,0.0062526292167603
+UDN-P1,Overlapping toe,2,0.0060891341418027
+UDN-P1,Drooling,85,0.0057123596780002
+UDN-P1,Gastroesophageal reflux,268,0.005148937460035
+UDN-P1,Abnormal cerebral white matter morphology,76,0.0049364413134753
+UDN-P1,Dystonia,360,0.0047838604077696
+UDN-P1,Respiratory insufficiency,325,0.0039145173504948
+UDN-P1,T2 hypointense brainstem,1,0.0023449312429875
+UDN-P1,Chronic lung disease,1,0.0021787090227007
+UDN-P1,Laryngeal cleft,1,0.0020497560035437
+UDN-P1,Pancreatitis,63,0.0005664720083586