app.py

import streamlit as st
from ultralyticsplus import YOLO, render_result
import PIL.Image as Image
import numpy as np
import pandas as pd
import requests
from io import BytesIO
from fastai.vision.all import *
#from fastai.vision.all import load_learner

# Initialize Streamlit app
st.title("Blood Cell Detection with YOLOv8")

# Load YOLO model
model = YOLO('keremberke/yolov8m-blood-cell-detection')

# Set model parameters
model.overrides['conf'] = 0.25  # NMS confidence threshold
model.overrides['iou'] = 0.45   # NMS IoU threshold
model.overrides['agnostic_nms'] = False  # NMS class-agnostic
model.overrides['max_det'] = 1000  # Maximum number of detections per image

# Load the FastAI model for WBC identification
fastai_model = load_learner('model1.pkl')

# File uploader for image input
uploaded_file = st.file_uploader("Upload an image for detection", type=["jpg", "png"])

if uploaded_file:
    # Open the uploaded image
    image = Image.open(uploaded_file)
    
    # Perform inference
    results = model.predict(np.array(image))
    
    # Display results
    st.image(image, caption="Uploaded Image", use_column_width=True)
    
    # Render detection results
    rendered_image = render_result(model=model, image=image, result=results[0])
    
    # Show the rendered result
    st.image(rendered_image, caption="Detection Results", use_column_width=True)
    
    # Count the number of each cell type
    cell_counts = {"RBC": 0, "WBC": 0, "Platelets": 0}
    
    # Count cells and check for WBC
    has_wbc = False
    # Display details of detected boxes
    st.write("Detection Results:")
    for box in results[0].boxes:
        class_index = int(box.cls)  # Get the class index
        if class_index == 1:  # RBC
            cell_counts["RBC"] += 1
        elif class_index == 2:  # WBC
            cell_counts["WBC"] += 1
            has_wbc = True  # WBC detected
        elif class_index == 0:  # Platelets
            cell_counts["Platelets"] += 1
        
        # Display bounding box information
        #st.write(f"Bounding box: {box.xyxy}")
        #st.write(f"Confidence: {box.conf}")
        #st.write(f"Class: {box.cls}")

    # Display the counts of each cell type
    st.write("Cell Type Counts:")
    st.write(pd.DataFrame.from_dict(cell_counts, orient='index', columns=['Count']))
    # If a WBC is detected, run the second model
    if has_wbc:
        # Perform inference with the FastAI model
        pred, idx, probs = fastai_model.predict(image)
        st.write("White Blood Cell Classification:")
        categories = ('EOSINOPHIL', 'LYMPHOCYTE', 'MONOCYTE', 'NEUTROPHIL')
        results_dict = dict(zip(categories, map(float, probs)))
        st.write(results_dict)
else:
    st.write("Upload an image to start detection.")