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Runtime error
Runtime error
Commit ·
2e1e60c
1
Parent(s): 55d7f2c
fix after violin
Browse files
app.py
CHANGED
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@@ -423,8 +423,8 @@ def perturb(gene, locus1, locus2, use_max_gene, tf_knockout):
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violin_img = violin_img[:, :, [1, 2, 3, 0]]
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fig, ax = plt.subplots(figsize=(6, 4))
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| 426 |
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sc.pl.violin(rna, '
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ax.set_title(f'{max_gene if use_max_gene else gene} expression after perturbation')
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fig.tight_layout()
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fig.canvas.draw()
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violin_img_new = np.frombuffer(fig.canvas.tostring_argb(), dtype=np.uint8)
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violin_img = violin_img[:, :, [1, 2, 3, 0]]
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fig, ax = plt.subplots(figsize=(6, 4))
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sc.pl.violin(rna, 'new_mean', groupby='celltype', show=False, ax=ax, rotation=90)
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ax.set_title(f'{max_gene if use_max_gene else gene} normalized expression after perturbation')
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fig.tight_layout()
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fig.canvas.draw()
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violin_img_new = np.frombuffer(fig.canvas.tostring_argb(), dtype=np.uint8)
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