EPCOT / pretrain /layers.py
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import torch
import torch.nn as nn
import numpy as np
import torch.nn.functional as F
class CNN(nn.Module):
def __init__(self):
super(CNN, self).__init__()
conv_kernel_size1 = 10
conv_kernel_size2 = 8
pool_kernel_size1 = 5
pool_kernel_size2 = 4
self.conv_net = nn.Sequential(
nn.Conv1d(5, 256, kernel_size=conv_kernel_size1),
nn.ReLU(inplace=True),
nn.Dropout(p=0.1),
nn.Conv1d(256, 256, kernel_size=conv_kernel_size1),
nn.BatchNorm1d(256),
nn.ReLU(inplace=True),
nn.MaxPool1d(kernel_size=pool_kernel_size1, stride=pool_kernel_size1),
nn.Dropout(p=0.1),
nn.Conv1d(256, 360, kernel_size=conv_kernel_size2),
nn.ReLU(inplace=True),
nn.Dropout(p=0.1),
nn.Conv1d(360, 360, kernel_size=conv_kernel_size2),
nn.BatchNorm1d(360),
nn.ReLU(inplace=True),
nn.MaxPool1d(kernel_size=pool_kernel_size2, stride=pool_kernel_size2),
nn.Dropout(p=0.1),
nn.Conv1d(360, 512, kernel_size=conv_kernel_size2),
nn.ReLU(inplace=True),
nn.Dropout(p=0.2),
nn.Conv1d(512, 512, kernel_size=conv_kernel_size2),
nn.BatchNorm1d(512),
nn.ReLU(inplace=True),
nn.Dropout(p=0.2))
self.num_channels = 512
def forward(self, x):
out = self.conv_net(x)
return out
# borrow from https://github.com/Alibaba-MIIL/ASL/blob/main/src/loss_functions/losses.py
class Balanced_AsymmetricLoss(nn.Module):
def __init__(self, gamma_neg=4, gamma_pos=1, clip=0.05, alpha=None, eps=1e-8, disable_torch_grad_focal_loss=True):
super(Balanced_AsymmetricLoss, self).__init__()
self.gamma_neg = gamma_neg
self.gamma_pos = gamma_pos
self.clip = clip
self.disable_torch_grad_focal_loss = disable_torch_grad_focal_loss
self.eps = eps
self.alpha = alpha
def forward(self, x, y, mask):
# Calculating Probabilities
assert y.shape == mask.shape
x_sigmoid = torch.sigmoid(x)
xs_pos = x_sigmoid
xs_neg = 1 - x_sigmoid
# Asymmetric Clipping
if self.clip is not None and self.clip > 0:
xs_neg = (xs_neg + self.clip).clamp(max=1)
# Basic CE calculation
los_pos = y * torch.log(xs_pos.clamp(min=self.eps))
los_neg = (1 - y) * torch.log(xs_neg.clamp(min=self.eps))
if self.alpha is not None:
los_pos = self.alpha * los_pos
loss = los_pos + los_neg
# Asymmetric Focusing
if self.gamma_neg > 0 or self.gamma_pos > 0:
if self.disable_torch_grad_focal_loss:
torch.set_grad_enabled(False)
pt0 = xs_pos * y
pt1 = xs_neg * (1 - y) # pt = p if t > 0 else 1-p
pt = pt0 + pt1
one_sided_gamma = self.gamma_pos * y + self.gamma_neg * (1 - y)
one_sided_w = torch.pow(1 - pt, one_sided_gamma)
if self.disable_torch_grad_focal_loss:
torch.set_grad_enabled(True)
loss *= one_sided_w
loss *= mask
return -loss.sum() / (torch.sum(mask) + self.eps)