Fix chart scaling and component update handling: 1) Improve default scaling of plotly charts with fixed dimensions and better auto-scaling 2) Fix component update mechanism in progressive_ui.py to properly handle different component types

Fix progressive loading and UI button activation issues: 1) Fix KeyError: 'jaccard' in metrics computation 2) Fix 'Markdown' object has no attribute 'update' warning 3) Improve fuzzy matching method descriptions 4) Fix Structural Analysis button activation 5) Add consistent tooltip styling for all tabs

codebase cleanup