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fix notebook
Browse files
mlip_arena/tasks/eos_alloy/run.ipynb
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"source ~/.bashrc\n",
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"module load python\n",
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"source activate /pscratch/sd/c/cyrusyc/.conda/mlip-arena\n",
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"/pscratch/sd/c/cyrusyc/.conda/mlip-arena/bin/python -m distributed.cli.dask_worker tcp://128.55.64.37:38383 --name dummy-name --nthreads 1 --memory-limit 59.60GiB --nanny --death-timeout 60\n",
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"/pscratch/sd/c/cyrusyc/.conda/mlip-arena/bin/python -m distributed.cli.dask_worker tcp://128.55.64.21:34485 --name dummy-name --nthreads 1 --memory-limit 59.60GiB --nanny --death-timeout 60\n",
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"<pre style=\"white-space:pre;overflow-x:auto;line-height:normal;font-family:Menlo,'DejaVu Sans Mono',consolas,'Courier New',monospace\">22:51:52.414 | <span style=\"color: #008080; text-decoration-color: #008080\">INFO</span> | prefect.engine - Created flow run<span style=\"color: #800080; text-decoration-color: #800080\"> 'sly-owl'</span> for flow<span style=\"color: #800080; text-decoration-color: #800080; font-weight: bold\"> 'run-from-db'</span>\n",
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"<pre style=\"white-space:pre;overflow-x:auto;line-height:normal;font-family:Menlo,'DejaVu Sans Mono',consolas,'Courier New',monospace\">13:44:10.434 | <span style=\"color: #008080; text-decoration-color: #008080\">INFO</span> | prefect.engine - Created flow run<span style=\"color: #800080; text-decoration-color: #800080\"> 'khaki-spider'</span> for flow<span style=\"color: #800080; text-decoration-color: #800080; font-weight: bold\"> 'run-from-db'</span>\n",
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"13:44:10.434 | \u001b[36mINFO\u001b[0m | prefect.engine - Created flow run\u001b[35m 'khaki-spider'\u001b[0m for flow\u001b[1;35m 'run-from-db'\u001b[0m\n"
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"<pre style=\"white-space:pre;overflow-x:auto;line-height:normal;font-family:Menlo,'DejaVu Sans Mono',consolas,'Courier New',monospace\">22:51:52.419 | <span style=\"color: #008080; text-decoration-color: #008080\">INFO</span> | prefect.engine - View at <span style=\"color: #0000ff; text-decoration-color: #0000ff\">https://app.prefect.cloud/account/f7d40474-9362-4bfa-8950-ee6a43ec00f3/workspace/d4bb0913-5f5e-49f7-bfc5-06509088baeb/runs/flow-run/d2afea80-afd7-4be2-b734-087f31274217</span>\n",
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"22:51:52.419 | \u001b[36mINFO\u001b[0m | prefect.engine - View at \u001b[94mhttps://app.prefect.cloud/account/f7d40474-9362-4bfa-8950-ee6a43ec00f3/workspace/d4bb0913-5f5e-49f7-bfc5-06509088baeb/runs/flow-run/d2afea80-afd7-4be2-b734-087f31274217\u001b[0m\n"
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"<pre style=\"white-space:pre;overflow-x:auto;line-height:normal;font-family:Menlo,'DejaVu Sans Mono',consolas,'Courier New',monospace\">13:44:10.439 | <span style=\"color: #008080; text-decoration-color: #008080\">INFO</span> | prefect.engine - View at <span style=\"color: #0000ff; text-decoration-color: #0000ff\">https://app.prefect.cloud/account/f7d40474-9362-4bfa-8950-ee6a43ec00f3/workspace/d4bb0913-5f5e-49f7-bfc5-06509088baeb/runs/flow-run/1acc1e4f-4cbc-49d7-964d-a132abd28d08</span>\n",
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"<pre style=\"white-space:pre;overflow-x:auto;line-height:normal;font-family:Menlo,'DejaVu Sans Mono',consolas,'Courier New',monospace\">22:51:53.100 | <span style=\"color: #008080; text-decoration-color: #008080\">INFO</span> | prefect.task_runner.dask - Connecting to existing Dask cluster SLURMCluster(f5a25e18, 'tcp://128.55.64.37:38383', workers=0, threads=0, memory=0 B)\n",
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"<pre style=\"white-space:pre;overflow-x:auto;line-height:normal;font-family:Menlo,'DejaVu Sans Mono',consolas,'Courier New',monospace\">13:44:11.086 | <span style=\"color: #008080; text-decoration-color: #008080\">INFO</span> | prefect.task_runner.dask - Connecting to existing Dask cluster SLURMCluster(58a52fcd, 'tcp://128.55.64.21:34485', workers=0, threads=0, memory=0 B)\n",
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"13:44:11.086 | \u001b[36mINFO\u001b[0m | prefect.task_runner.dask - Connecting to existing Dask cluster SLURMCluster(58a52fcd, 'tcp://128.55.64.21:34485', workers=0, threads=0, memory=0 B)\n"
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"<pre style=\"white-space:pre;overflow-x:auto;line-height:normal;font-family:Menlo,'DejaVu Sans Mono',consolas,'Courier New',monospace\">22:52:10.768 | <span style=\"color: #008080; text-decoration-color: #008080\">INFO</span> | Task run 'get_atoms_from_db-f27' - Created task run 'get_atoms_from_db-f27' for task 'get_atoms_from_db'\n",
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"22:52:10.768 | \u001b[36mINFO\u001b[0m | Task run 'get_atoms_from_db-f27' - Created task run 'get_atoms_from_db-f27' for task 'get_atoms_from_db'\n"
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"<pre style=\"white-space:pre;overflow-x:auto;line-height:normal;font-family:Menlo,'DejaVu Sans Mono',consolas,'Courier New',monospace\">13:45:41.275 | <span style=\"color: #008080; text-decoration-color: #008080\">INFO</span> | Task run 'get_atoms_from_db-8e2' - Created task run 'get_atoms_from_db-8e2' for task 'get_atoms_from_db'\n",
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"<pre style=\"white-space:pre;overflow-x:auto;line-height:normal;font-family:Menlo,'DejaVu Sans Mono',consolas,'Courier New',monospace\">22:52:41.782 | <span style=\"color: #008080; text-decoration-color: #008080\">INFO</span> | Task run 'get_atoms_from_db-f27' - Finished in state <span style=\"color: #008000; text-decoration-color: #008000\">Completed</span>()\n",
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"<pre style=\"white-space:pre;overflow-x:auto;line-height:normal;font-family:Menlo,'DejaVu Sans Mono',consolas,'Courier New',monospace\">13:46:12.488 | <span style=\"color: #008080; text-decoration-color: #008080\">INFO</span> | Task run 'get_atoms_from_db-8e2' - Finished in state <span style=\"color: #008000; text-decoration-color: #008000\">Completed</span>()\n",
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"metadata": {},
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"source ~/.bashrc\n",
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"module load python\n",
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"source activate /pscratch/sd/c/cyrusyc/.conda/mlip-arena\n",
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"/pscratch/sd/c/cyrusyc/.conda/mlip-arena/bin/python -m distributed.cli.dask_worker tcp://128.55.64.21:44037 --name dummy-name --nthreads 1 --memory-limit 59.60GiB --nanny --death-timeout 60\n",
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"<pre style=\"white-space:pre;overflow-x:auto;line-height:normal;font-family:Menlo,'DejaVu Sans Mono',consolas,'Courier New',monospace\">18:16:46.381 | <span style=\"color: #008080; text-decoration-color: #008080\">INFO</span> | prefect.engine - Created flow run<span style=\"color: #800080; text-decoration-color: #800080\"> 'zealous-crocodile'</span> for flow<span style=\"color: #800080; text-decoration-color: #800080; font-weight: bold\"> 'run-from-db'</span>\n",
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"18:16:46.381 | \u001b[36mINFO\u001b[0m | prefect.engine - Created flow run\u001b[35m 'zealous-crocodile'\u001b[0m for flow\u001b[1;35m 'run-from-db'\u001b[0m\n"
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"18:16:46.387 | \u001b[36mINFO\u001b[0m | prefect.engine - View at \u001b[94mhttps://app.prefect.cloud/account/f7d40474-9362-4bfa-8950-ee6a43ec00f3/workspace/d4bb0913-5f5e-49f7-bfc5-06509088baeb/runs/flow-run/60c251d1-5269-41f9-90e5-6e74663a9efa\u001b[0m\n"
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"<pre style=\"white-space:pre;overflow-x:auto;line-height:normal;font-family:Menlo,'DejaVu Sans Mono',consolas,'Courier New',monospace\">18:16:47.016 | <span style=\"color: #008080; text-decoration-color: #008080\">INFO</span> | prefect.task_runner.dask - Connecting to existing Dask cluster SLURMCluster(25908b64, 'tcp://128.55.64.21:44037', workers=0, threads=0, memory=0 B)\n",
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"18:16:47.016 | \u001b[36mINFO\u001b[0m | prefect.task_runner.dask - Connecting to existing Dask cluster SLURMCluster(25908b64, 'tcp://128.55.64.21:44037', workers=0, threads=0, memory=0 B)\n"
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"<pre style=\"white-space:pre;overflow-x:auto;line-height:normal;font-family:Menlo,'DejaVu Sans Mono',consolas,'Courier New',monospace\">18:16:50.804 | <span style=\"color: #008080; text-decoration-color: #008080\">INFO</span> | Task run 'get_atoms_from_db-f2b' - Created task run 'get_atoms_from_db-f2b' for task 'get_atoms_from_db'\n",
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"<pre style=\"white-space:pre;overflow-x:auto;line-height:normal;font-family:Menlo,'DejaVu Sans Mono',consolas,'Courier New',monospace\">18:17:20.763 | <span style=\"color: #008080; text-decoration-color: #008080\">INFO</span> | Task run 'get_atoms_from_db-f2b' - Finished in state <span style=\"color: #008000; text-decoration-color: #008000\">Completed</span>()\n",
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"18:17:20.763 | \u001b[36mINFO\u001b[0m | Task run 'get_atoms_from_db-f2b' - Finished in state \u001b[32mCompleted\u001b[0m()\n"
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