Spaces:
Sleeping
Sleeping
ashishkgpian
commited on
Update app.py
Browse files
app.py
CHANGED
@@ -1,51 +1,3 @@
|
|
1 |
-
import gradio as gr
|
2 |
-
from transformers import pipeline
|
3 |
-
import pandas as pd
|
4 |
-
import os
|
5 |
-
|
6 |
-
# Load the model
|
7 |
-
classifier = pipeline(
|
8 |
-
"text-classification",
|
9 |
-
model="ashishkgpian/biobert_icd9_classifier_ehr"
|
10 |
-
)
|
11 |
-
|
12 |
-
# Load ICD9 codes data
|
13 |
-
icd9_data = pd.read_csv('D_ICD_DIAGNOSES.csv')
|
14 |
-
icd9_data.columns = ['ROW_ID', 'ICD9_CODE', 'SHORT_TITLE', 'LONG_TITLE']
|
15 |
-
|
16 |
-
def preprocessing(test_df):
|
17 |
-
test_df.loc[
|
18 |
-
test_df['ICD9_CODE'].str.startswith("V"), 'ICD9_CODE'] = test_df.ICD9_CODE.apply(
|
19 |
-
lambda x: x[:4])
|
20 |
-
test_df.loc[
|
21 |
-
test_df['ICD9_CODE'].str.startswith("E"), 'ICD9_CODE'] = test_df.ICD9_CODE.apply(
|
22 |
-
lambda x: x[:4])
|
23 |
-
test_df.loc[(~test_df.ICD9_CODE.str.startswith("E")) & (
|
24 |
-
~test_df.ICD9_CODE.str.startswith("V")), 'ICD9_CODE'] = test_df.ICD9_CODE.apply(
|
25 |
-
lambda x: x[:3])
|
26 |
-
return test_df
|
27 |
-
|
28 |
-
icd9_data = preprocessing(icd9_data)
|
29 |
-
|
30 |
-
def classify_symptoms(text):
|
31 |
-
try:
|
32 |
-
results = classifier(text, top_k=5)
|
33 |
-
formatted_results = []
|
34 |
-
for result in results:
|
35 |
-
code = result['label']
|
36 |
-
code_info = icd9_data[icd9_data['ICD9_CODE'] == code]
|
37 |
-
formatted_results.append({
|
38 |
-
"ICD9 Code": code,
|
39 |
-
"Short Title": code_info['SHORT_TITLE'].iloc[0] if not code_info.empty else "N/A",
|
40 |
-
"Long Title": code_info['LONG_TITLE'].iloc[0] if not code_info.empty else "N/A",
|
41 |
-
"Confidence": f"{result['score']:.2%}"
|
42 |
-
})
|
43 |
-
return formatted_results
|
44 |
-
except Exception as e:
|
45 |
-
return f"Error processing classification: {str(e)}"
|
46 |
-
|
47 |
-
# Enhanced CSS with white background and black text
|
48 |
-
|
49 |
custom_css = """
|
50 |
.gradio-container {
|
51 |
width: 100% !important;
|
@@ -75,95 +27,89 @@ custom_css = """
|
|
75 |
background: #000000;
|
76 |
color: #ffffff;
|
77 |
}
|
78 |
-
h1 {
|
79 |
-
color: #b388ff !important;
|
80 |
-
font-size: 3rem !important;
|
81 |
-
margin-bottom: 0.5rem !important;
|
82 |
-
font-weight: 700 !important;
|
83 |
-
}
|
84 |
-
h3 {
|
85 |
-
color: #9575cd !important;
|
86 |
-
font-size: 1.4rem !important;
|
87 |
-
font-weight: 500 !important;
|
88 |
-
margin-bottom: 2rem !important;
|
89 |
-
}
|
90 |
.input-output-row {
|
91 |
display: flex !important;
|
92 |
gap: 2rem !important;
|
93 |
margin: 2rem 0 !important;
|
94 |
}
|
95 |
.input-container {
|
96 |
-
background: #
|
97 |
-
padding:
|
98 |
border-radius: 12px !important;
|
99 |
-
box-shadow: 0 4px 6px rgba(255, 255, 255, 0.05) !important;
|
100 |
width: 50% !important;
|
101 |
-
border: 1px solid #333333 !important;
|
102 |
flex: 1 !important;
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
103 |
}
|
104 |
.input-container label {
|
105 |
color: #ffffff !important;
|
106 |
-
font-weight:
|
107 |
-
font-size:
|
108 |
margin-bottom: 0.5rem !important;
|
109 |
background: transparent !important;
|
110 |
}
|
111 |
textarea {
|
112 |
-
background: #
|
113 |
color: #ffffff !important;
|
114 |
-
border: 2px solid #
|
115 |
border-radius: 8px !important;
|
116 |
padding: 1rem !important;
|
117 |
-
font-size:
|
118 |
-
min-height:
|
119 |
width: 100% !important;
|
|
|
120 |
}
|
121 |
.submit-btn {
|
122 |
-
background-color: #
|
123 |
color: white !important;
|
124 |
-
padding:
|
125 |
border-radius: 8px !important;
|
126 |
-
font-size:
|
127 |
-
margin-top:
|
128 |
transition: all 0.3s ease !important;
|
129 |
-
width:
|
130 |
-
font-weight:
|
131 |
border: none !important;
|
132 |
}
|
133 |
.submit-btn:hover {
|
134 |
-
background-color: #
|
135 |
}
|
136 |
.output-container {
|
137 |
-
background: #
|
138 |
-
padding:
|
139 |
border-radius: 12px !important;
|
140 |
-
box-shadow: 0 4px 6px rgba(255, 255, 255, 0.05) !important;
|
141 |
width: 50% !important;
|
142 |
-
border: 1px solid #333333 !important;
|
143 |
-
color: #ffffff !important;
|
144 |
flex: 1 !important;
|
|
|
145 |
}
|
146 |
.output-container label {
|
147 |
color: #ffffff !important;
|
148 |
-
font-weight:
|
149 |
-
font-size:
|
150 |
margin-bottom: 1rem !important;
|
151 |
background: transparent !important;
|
152 |
}
|
153 |
.examples-container {
|
154 |
-
background: #
|
155 |
-
padding:
|
156 |
border-radius: 12px !important;
|
157 |
margin: 2rem 0 !important;
|
158 |
-
box-shadow: 0 4px 6px rgba(255, 255, 255, 0.05) !important;
|
159 |
width: 100% !important;
|
160 |
-
border: 1px solid #333333 !important;
|
161 |
color: #ffffff !important;
|
162 |
}
|
163 |
.examples-container label {
|
164 |
color: #ffffff !important;
|
165 |
-
font-weight:
|
166 |
-
font-size:
|
167 |
background: transparent !important;
|
168 |
}
|
169 |
.footer {
|
@@ -180,20 +126,15 @@ textarea {
|
|
180 |
with gr.Blocks(css=custom_css) as demo:
|
181 |
with gr.Row(elem_classes=["main-container"]):
|
182 |
with gr.Column(elem_classes=["content-wrapper"]):
|
183 |
-
gr.Markdown(
|
184 |
-
"""
|
185 |
-
# 🏥 Clinical Symptom ICD9 Classifier
|
186 |
-
### AI-Powered Medical Diagnosis Code Suggestion Tool
|
187 |
-
"""
|
188 |
-
)
|
189 |
-
|
190 |
with gr.Row(elem_classes=["input-output-row"]):
|
191 |
with gr.Column(elem_classes=["input-container"]):
|
192 |
-
|
193 |
-
|
194 |
-
|
195 |
-
|
196 |
-
|
|
|
|
|
197 |
submit_btn = gr.Button("Analyze Symptoms", elem_classes=["submit-btn"])
|
198 |
|
199 |
with gr.Column(elem_classes=["output-container"]):
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
custom_css = """
|
2 |
.gradio-container {
|
3 |
width: 100% !important;
|
|
|
27 |
background: #000000;
|
28 |
color: #ffffff;
|
29 |
}
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
30 |
.input-output-row {
|
31 |
display: flex !important;
|
32 |
gap: 2rem !important;
|
33 |
margin: 2rem 0 !important;
|
34 |
}
|
35 |
.input-container {
|
36 |
+
background: #1a1a1a !important;
|
37 |
+
padding: 1.5rem !important;
|
38 |
border-radius: 12px !important;
|
|
|
39 |
width: 50% !important;
|
|
|
40 |
flex: 1 !important;
|
41 |
+
display: flex !important;
|
42 |
+
flex-direction: column !important;
|
43 |
+
gap: 1rem !important;
|
44 |
+
}
|
45 |
+
.inner-input-container {
|
46 |
+
background: #262626 !important;
|
47 |
+
padding: 1.5rem !important;
|
48 |
+
border-radius: 8px !important;
|
49 |
+
display: flex !important;
|
50 |
+
flex-direction: column !important;
|
51 |
+
gap: 1rem !important;
|
52 |
}
|
53 |
.input-container label {
|
54 |
color: #ffffff !important;
|
55 |
+
font-weight: 500 !important;
|
56 |
+
font-size: 1rem !important;
|
57 |
margin-bottom: 0.5rem !important;
|
58 |
background: transparent !important;
|
59 |
}
|
60 |
textarea {
|
61 |
+
background: #262626 !important;
|
62 |
color: #ffffff !important;
|
63 |
+
border: 2px solid #7c4dff !important;
|
64 |
border-radius: 8px !important;
|
65 |
padding: 1rem !important;
|
66 |
+
font-size: 1rem !important;
|
67 |
+
min-height: 120px !important;
|
68 |
width: 100% !important;
|
69 |
+
resize: none !important;
|
70 |
}
|
71 |
.submit-btn {
|
72 |
+
background-color: #7c4dff !important;
|
73 |
color: white !important;
|
74 |
+
padding: 0.75rem !important;
|
75 |
border-radius: 8px !important;
|
76 |
+
font-size: 1rem !important;
|
77 |
+
margin-top: 0.5rem !important;
|
78 |
transition: all 0.3s ease !important;
|
79 |
+
width: 100% !important;
|
80 |
+
font-weight: 500 !important;
|
81 |
border: none !important;
|
82 |
}
|
83 |
.submit-btn:hover {
|
84 |
+
background-color: #6c3fff !important;
|
85 |
}
|
86 |
.output-container {
|
87 |
+
background: #1a1a1a !important;
|
88 |
+
padding: 1.5rem !important;
|
89 |
border-radius: 12px !important;
|
|
|
90 |
width: 50% !important;
|
|
|
|
|
91 |
flex: 1 !important;
|
92 |
+
color: #ffffff !important;
|
93 |
}
|
94 |
.output-container label {
|
95 |
color: #ffffff !important;
|
96 |
+
font-weight: 500 !important;
|
97 |
+
font-size: 1rem !important;
|
98 |
margin-bottom: 1rem !important;
|
99 |
background: transparent !important;
|
100 |
}
|
101 |
.examples-container {
|
102 |
+
background: #1a1a1a !important;
|
103 |
+
padding: 1.5rem !important;
|
104 |
border-radius: 12px !important;
|
105 |
margin: 2rem 0 !important;
|
|
|
106 |
width: 100% !important;
|
|
|
107 |
color: #ffffff !important;
|
108 |
}
|
109 |
.examples-container label {
|
110 |
color: #ffffff !important;
|
111 |
+
font-weight: 500 !important;
|
112 |
+
font-size: 1rem !important;
|
113 |
background: transparent !important;
|
114 |
}
|
115 |
.footer {
|
|
|
126 |
with gr.Blocks(css=custom_css) as demo:
|
127 |
with gr.Row(elem_classes=["main-container"]):
|
128 |
with gr.Column(elem_classes=["content-wrapper"]):
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
129 |
with gr.Row(elem_classes=["input-output-row"]):
|
130 |
with gr.Column(elem_classes=["input-container"]):
|
131 |
+
gr.Markdown("Clinical Symptom Description")
|
132 |
+
with gr.Column(elem_classes=["inner-input-container"]):
|
133 |
+
input_text = gr.Textbox(
|
134 |
+
show_label=False,
|
135 |
+
placeholder="Enter detailed patient symptoms and clinical observations...",
|
136 |
+
lines=5
|
137 |
+
)
|
138 |
submit_btn = gr.Button("Analyze Symptoms", elem_classes=["submit-btn"])
|
139 |
|
140 |
with gr.Column(elem_classes=["output-container"]):
|