andreped commited on
Commit
f339a16
1 Parent(s): bcdbf4f

Drop conda support + bump v1.5.0

Browse files
Files changed (3) hide show
  1. .github/workflows/build.yml +0 -42
  2. demo/app.py +1 -1
  3. setup.py +1 -1
.github/workflows/build.yml CHANGED
@@ -79,45 +79,3 @@ jobs:
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  - name: Test inference .nii
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  run: |
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  livermask --input samples --output results --verbose --vessels
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-
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- conda:
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- needs: build
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- runs-on: ${{ matrix.os }}
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- strategy:
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- matrix:
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- os: [ windows-2019, ubuntu-20.04 ] #, macos-11 ]
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- python-version: [ 3.7 ]
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- steps:
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- - uses: conda-incubator/setup-miniconda@v2
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- with:
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- auto-update-conda: true
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- python-version: 3.7
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-
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- - name: Download artifact
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- uses: actions/download-artifact@master
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- with:
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- name: "Python wheel"
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-
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- - name: Install wheel
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- if: runner.os == 'Windows'
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- run: |
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- $TARGET = Resolve-Path "${{github.workspace}}/livermask-*.whl" | Select -ExpandProperty Path
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- echo $TARGET
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- pip3 install --find-links=${{github.workspace}} $TARGET
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-
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- - name: Install wheel
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- if: runner.os != 'Windows'
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- run: pip3 install --find-links=${{github.workspace}} livermask-*.whl
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-
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- - name: Download test sample
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- run: |
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- pip3 install gdown==4.4.0
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- mkdir samples
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- mkdir results
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- cd samples
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- gdown https://drive.google.com/uc?id=1shjSrFjS4PHE5sTku30PZTLPZpGu24o3
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- gdown https://drive.google.com/uc?id=1bNmls5o0Rxw5HvBF1IYnEzmpysYJaywN
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-
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- - name: Test inference
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- run: |
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- livermask --input samples --output results --verbose --vessels
 
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  - name: Test inference .nii
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  run: |
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  livermask --input samples --output results --verbose --vessels
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
demo/app.py CHANGED
@@ -40,7 +40,7 @@ def load_mesh(mesh_file_name):
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  if __name__ == "__main__":
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  demo = gr.Interface(
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  fn=load_mesh,
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- inputs=gr.UploadButton(label="Click to Upload a File", file_type=[".nii", ".nii.nz"], file_count="single"),
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  outputs=gr.Model3D(clear_color=[0.0, 0.0, 0.0, 0.0], label="3D Model"),
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  title="livermask: Automatic Liver Parenchyma segmentation in CT",
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  description="Using pretrained deep learning model trained on the LiTS17 dataset",
 
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  if __name__ == "__main__":
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  demo = gr.Interface(
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  fn=load_mesh,
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+ inputs=gr.UploadButton(label="Click to Upload a File", file_types=[".nii", ".nii.nz"], file_count="single"),
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  outputs=gr.Model3D(clear_color=[0.0, 0.0, 0.0, 0.0], label="3D Model"),
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  title="livermask: Automatic Liver Parenchyma segmentation in CT",
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  description="Using pretrained deep learning model trained on the LiTS17 dataset",
setup.py CHANGED
@@ -10,7 +10,7 @@ with open('requirements.txt', 'r', encoding='utf-16', errors='ignore') as ff:
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  setup(
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  name='livermask',
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- version='1.4.2',
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  author="André Pedersen and Javier Pérez de Frutos",
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  author_email="andrped94@gmail.com",
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  license='MIT',
 
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  setup(
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  name='livermask',
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+ version='1.5.0',
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  author="André Pedersen and Javier Pérez de Frutos",
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  author_email="andrped94@gmail.com",
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  license='MIT',