Attempt to copy model inside /code container

Dockerfile

@@ -34,7 +34,7 @@ RUN apt install wget -y
 
 # Download pretrained parenchyma model
 RUN wget "https://github.com/andreped/livermask/releases/download/trained-models-v1/model.h5"
-#COPY --chown=user ./model.h5 /code/model.h5
+COPY --chown=user ./model.h5 /code/model.h5
 
 # Set up a new user named "user" with user ID 1000
 RUN useradd -m -u 1000 user

livermask/utils/run.py

@@ -70,6 +70,7 @@ def run_analysis(path, output, cpu, verbose, vessels, extension, name=None, name
     if multiple_flag:
         os.makedirs(output + "/", exist_ok=True)
 
+    log.info("Starting inference...")
     for curr in tqdm(paths, "CT:"):
         # check if current file is a nifti file, if not, skip
         if curr.endswith(".nii") or curr.endswith(".nii.gz"):