andreped commited on
Commit
2c24e9f
1 Parent(s): dde96f8

CLI works well on Windows

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Files changed (1) hide show
  1. livermask/livermask.py +2 -11
livermask/livermask.py CHANGED
@@ -14,12 +14,8 @@ import pkg_resources
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  import tensorflow as tf
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- # due to this: https://github.com/tensorflow/tensorflow/issues/35029
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- os.environ['TF_FORCE_GPU_ALLOW_GROWTH'] = 'true'
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-
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-
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- # mute some warnings
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- warnings.filterwarnings('ignore', '.*output shape of zoom.*')
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  def intensity_normalization(volume, intensity_clipping_range):
@@ -32,7 +28,6 @@ def intensity_normalization(volume, intensity_clipping_range):
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  max_val = np.amax(result)
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  if (max_val - min_val) != 0:
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  result = (result - min_val) / (max_val - min_val)
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-
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  return result
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  def post_process(pred):
@@ -40,15 +35,11 @@ def post_process(pred):
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  def get_model(output):
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  url = "https://drive.google.com/uc?id=12or5Q79at2BtLgQ7IaglNGPFGRlEgEHc"
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- # output = "./model.h5"
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  md5 = "ef5a6dfb794b39bea03f5496a9a49d4d"
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  gdown.cached_download(url, output, md5=md5) #, postprocess=gdown.extractall)
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  def func(path, output, cpu):
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-
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  cwd = "/".join(os.path.realpath(__file__).replace("\\", "/").split("/")[:-1]) + "/"
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-
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- print("Current cwd:", cwd)
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  name = cwd + "model.h5"
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  # get model
 
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  import tensorflow as tf
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+ os.environ['TF_FORCE_GPU_ALLOW_GROWTH'] = 'true' # due to this: https://github.com/tensorflow/tensorflow/issues/35029
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+ warnings.filterwarnings('ignore', '.*output shape of zoom.*') # mute some warnings
 
 
 
 
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  def intensity_normalization(volume, intensity_clipping_range):
 
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  max_val = np.amax(result)
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  if (max_val - min_val) != 0:
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  result = (result - min_val) / (max_val - min_val)
 
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  return result
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  def post_process(pred):
 
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  def get_model(output):
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  url = "https://drive.google.com/uc?id=12or5Q79at2BtLgQ7IaglNGPFGRlEgEHc"
 
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  md5 = "ef5a6dfb794b39bea03f5496a9a49d4d"
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  gdown.cached_download(url, output, md5=md5) #, postprocess=gdown.extractall)
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  def func(path, output, cpu):
 
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  cwd = "/".join(os.path.realpath(__file__).replace("\\", "/").split("/")[:-1]) + "/"
 
 
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  name = cwd + "model.h5"
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  # get model