Spaces:

andreped
/

livermask

Running

App Files Files Community

livermask / Dockerfile

andreped

Added example CT to demo

13ee8c5 about 1 year ago

raw history blame contribute delete

No virus

1.97 kB

	# read the doc: https://huggingface.co/docs/hub/spaces-sdks-docker
	# you will also find guides on how best to write your Dockerfile
	FROM tensorflow/tensorflow:2.4.2-gpu

	# fix for broken keys in Ubuntu-18.04
	RUN apt-key adv --fetch-keys https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2004/x86_64/3bf863cc.pub

	# install Python 3.7
	RUN apt-get update && apt-get install -y --no-install-recommends software-properties-common \
	libsm6 libxext6 libxrender-dev curl \
	&& rm -rf /var/lib/apt/lists/*

	RUN echo "** Installing Python **" && \
	add-apt-repository ppa:deadsnakes/ppa && \
	apt-get install -y build-essential python3.7 python3.7-dev python3-pip && \
	curl -O https://bootstrap.pypa.io/get-pip.py && \
	python3.7 get-pip.py && \
	rm -rf /var/lib/apt/lists/*

	WORKDIR /code

	RUN apt-get update -y
	RUN apt install git --fix-missing -y

	RUN ls -la

	# install dependencies
	COPY ./demo/requirements.txt /code/demo/requirements.txt
	RUN python3.7 -m pip install --no-cache-dir --upgrade -r /code/demo/requirements.txt

	# resolve issue with tf==2.4 and gradio dependency collision issue
	RUN python3.7 -m pip install --force-reinstall typing_extensions==4.0.0

	# Install wget
	RUN apt install wget -y

	# Set up a new user named "user" with user ID 1000
	RUN useradd -m -u 1000 user

	# Switch to the "user" user
	USER user

	# Set home to the user's home directory
	ENV HOME=/home/user \
	PATH=/home/user/.local/bin:$PATH

	# Set the working directory to the user's home directory
	WORKDIR $HOME/app

	# Copy the current directory contents into the container at $HOME/app setting the owner to the user
	COPY --chown=user . $HOME/app

	# Download pretrained parenchyma model
	RUN wget "https://github.com/andreped/livermask/releases/download/trained-models-v1/model.h5"

	# Download test sample
	RUN python3.7 -m pip install gdown && gdown "https://drive.google.com/uc?id=1shjSrFjS4PHE5sTku30PZTLPZpGu24o3"

	CMD ["python3.7", "demo/app.py"]