Vemund Fredriksen commited on
Commit
0d8deb6
1 Parent(s): c35dad1

Remove main method

Browse files
lungtumormask/dataprocessing.py CHANGED
@@ -247,19 +247,4 @@ def post_process(left_mask, right_mask, preprocess_dump):
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  stitched = np.logical_or(left, right).astype(int)
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- return stitched
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-
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-
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- if __name__ == "__main__":
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- path = "D:\\Datasets\MSD\\Images\\lung_003.nii.gz"
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- preprocess_dump = preprocess(path)
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-
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- unpad = post_process(preprocess_dump['left_lung'], preprocess_dump['right_lung'], preprocess_dump)
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-
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- import nibabel
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-
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- nimage = nibabel.Nifti1Image(unpad, preprocess_dump['org_affine'])
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- nibabel.save(nimage, "D:\\Datasets\\stitched.nii.gz")
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-
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-
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-
 
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  stitched = np.logical_or(left, right).astype(int)
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+ return stitched
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
lungtumormask/mask.py CHANGED
@@ -28,7 +28,4 @@ def mask(image_path, save_path):
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  print(f"Storing segmentation at {save_path}")
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  nimage = nibabel.Nifti1Image(infered, preprocess_dump['org_affine'])
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- nibabel.save(nimage, save_path)
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-
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- if __name__ == "__main__":
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- mask("D:\\Datasets\\MSD\\Images\\lung_003.nii.gz", "D:\\Datasets\\MSD\\Images\\out3.nii.gz")
 
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  print(f"Storing segmentation at {save_path}")
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  nimage = nibabel.Nifti1Image(infered, preprocess_dump['org_affine'])
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+ nibabel.save(nimage, save_path)