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| # read the doc: https://huggingface.co/docs/hub/spaces-sdks-docker | |
| # you will also find guides on how best to write your Dockerfile | |
| FROM python:3.8-slim | |
| # set language, format and stuff | |
| ENV LANG=C.UTF-8 LC_ALL=C.UTF-8 | |
| WORKDIR /code | |
| RUN apt-get update -y | |
| #RUN apt-get install -y python3 python3-pip | |
| RUN apt install git --fix-missing -y | |
| RUN apt install wget -y | |
| # installing other libraries | |
| RUN apt-get install python3-pip -y && \ | |
| apt-get -y install sudo | |
| RUN apt-get install curl -y | |
| RUN apt-get install nano -y | |
| RUN apt-get update && apt-get install -y git | |
| RUN apt-get install libblas-dev -y && apt-get install liblapack-dev -y | |
| RUN apt-get install gfortran -y | |
| RUN apt-get install libpng-dev -y | |
| RUN apt-get install python3-dev -y | |
| WORKDIR /code | |
| # install dependencies | |
| COPY ./demo/requirements.txt /code/demo/requirements.txt | |
| RUN pip install --no-cache-dir --upgrade -r /code/demo/requirements.txt | |
| # resolve issue with tf==2.4 and gradio dependency collision issue | |
| RUN pip install --force-reinstall typing_extensions==4.7.1 | |
| # lower pydantic version to work with typing_extensions deprecation | |
| RUN pip install --force-reinstall "pydantic<2.0.0" | |
| # Install wget | |
| RUN apt install wget -y && \ | |
| apt install unzip | |
| # Set up a new user named "user" with user ID 1000 | |
| RUN useradd -m -u 1000 user | |
| # Switch to the "user" user | |
| USER user | |
| # Set home to the user's home directory | |
| ENV HOME=/home/user \ | |
| PATH=/home/user/.local/bin:$PATH | |
| # Set the working directory to the user's home directory | |
| WORKDIR $HOME/app | |
| # Copy the current directory contents into the container at $HOME/app setting the owner to the user | |
| COPY --chown=user . $HOME/app | |
| # Download pretrained models | |
| RUN wget "https://github.com/raidionics/Raidionics-models/releases/download/1.2.0/Raidionics-CT_Airways-ONNX-v12.zip" && \ | |
| unzip "Raidionics-CT_Airways-ONNX-v12.zip" && mkdir -p resources/models/ && mv CT_Airways/ resources/models/CT_Airways/ | |
| RUN wget "https://github.com/raidionics/Raidionics-models/releases/download/1.2.0/Raidionics-CT_Lungs-ONNX-v12.zip" && \ | |
| unzip "Raidionics-CT_Lungs-ONNX-v12.zip" && mv CT_Lungs/ resources/models/CT_Lungs/ | |
| RUN rm -r *.zip | |
| # Download test sample | |
| # @TODO: I have resampled the volume to 1mm isotropic for faster computation | |
| RUN wget "https://github.com/andreped/neukit/releases/download/test-data/test_thorax_CT.nii.gz" | |
| # CMD ["/bin/bash"] | |
| CMD ["python3", "demo/app.py"] | |