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alessandro trinca tornidor
refactor: organize project with tests in a package, start following suggestions from pycharm, sonarlint and snyk
74a35d9
| import time | |
| from string import punctuation | |
| import numpy as np | |
| from dtwalign import dtw_from_distance_matrix | |
| from ortools.sat.python import cp_model | |
| from . import WordMetrics, app_logger | |
| offset_blank = 1 | |
| TIME_THRESHOLD_MAPPING = 5.0 | |
| def get_word_distance_matrix(words_estimated: list, words_real: list) -> np.array: | |
| number_of_real_words = len(words_real) | |
| number_of_estimated_words = len(words_estimated) | |
| word_distance_matrix = np.zeros( | |
| (number_of_estimated_words+offset_blank, number_of_real_words)) | |
| for idx_estimated in range(number_of_estimated_words): | |
| for idx_real in range(number_of_real_words): | |
| word_distance_matrix[idx_estimated, idx_real] = WordMetrics.edit_distance_python( | |
| words_estimated[idx_estimated], words_real[idx_real]) | |
| if offset_blank == 1: | |
| for idx_real in range(number_of_real_words): | |
| word_distance_matrix[number_of_estimated_words, | |
| idx_real] = len(words_real[idx_real]) | |
| return word_distance_matrix | |
| def get_best_path_from_distance_matrix(word_distance_matrix): | |
| modelCpp = cp_model.CpModel() | |
| number_of_real_words = word_distance_matrix.shape[1] | |
| number_of_estimated_words = word_distance_matrix.shape[0]-1 | |
| number_words = np.maximum(number_of_real_words, number_of_estimated_words) | |
| estimated_words_order = [modelCpp.NewIntVar(0, int( | |
| number_words - 1 + offset_blank), 'w%i' % i) for i in range(number_words+offset_blank)] | |
| # They are in ascending order | |
| for word_idx in range(number_words-1): | |
| modelCpp.Add( | |
| estimated_words_order[word_idx+1] >= estimated_words_order[word_idx]) | |
| total_phoneme_distance = 0 | |
| real_word_at_time = {} | |
| for idx_estimated in range(number_of_estimated_words): | |
| for idx_real in range(number_of_real_words): | |
| real_word_at_time[idx_estimated, idx_real] = modelCpp.NewBoolVar( | |
| 'real_word_at_time'+str(idx_real)+'-'+str(idx_estimated)) | |
| modelCpp.Add(estimated_words_order[idx_estimated] == idx_real).OnlyEnforceIf( | |
| real_word_at_time[idx_estimated, idx_real]) | |
| total_phoneme_distance += word_distance_matrix[idx_estimated, | |
| idx_real]*real_word_at_time[idx_estimated, idx_real] | |
| # If no word in time, difference is calculated from empty string | |
| for idx_real in range(number_of_real_words): | |
| word_has_a_match = modelCpp.NewBoolVar( | |
| 'word_has_a_match'+str(idx_real)) | |
| modelCpp.Add(sum([real_word_at_time[idx_estimated, idx_real] for idx_estimated in range( | |
| number_of_estimated_words)]) == 1).OnlyEnforceIf(word_has_a_match) | |
| total_phoneme_distance += word_distance_matrix[number_of_estimated_words, | |
| idx_real]*word_has_a_match.Not() | |
| # Loss should be minimized | |
| modelCpp.Minimize(total_phoneme_distance) | |
| solver = cp_model.CpSolver() | |
| solver.parameters.max_time_in_seconds = TIME_THRESHOLD_MAPPING | |
| status = solver.Solve(modelCpp) | |
| mapped_indices = [] | |
| try: | |
| for word_idx in range(number_words): | |
| mapped_indices.append( | |
| (solver.Value(estimated_words_order[word_idx]))) | |
| return np.array(mapped_indices, dtype=int) | |
| except Exception as ex: | |
| app_logger.error(f"ex:{ex}.") | |
| return [] | |
| def get_resulting_string(mapped_indices: np.array, words_estimated: list, words_real: list) -> list: | |
| mapped_words = [] | |
| mapped_words_indices = [] | |
| WORD_NOT_FOUND_TOKEN = '-' | |
| number_of_real_words = len(words_real) | |
| for word_idx in range(number_of_real_words): | |
| position_of_real_word_indices = np.where( | |
| mapped_indices == word_idx)[0].astype(int) | |
| if len(position_of_real_word_indices) == 0: | |
| mapped_words.append(WORD_NOT_FOUND_TOKEN) | |
| mapped_words_indices.append(-1) | |
| continue | |
| if len(position_of_real_word_indices) == 1: | |
| mapped_words.append( | |
| words_estimated[position_of_real_word_indices[0]]) | |
| mapped_words_indices.append(position_of_real_word_indices[0]) | |
| continue | |
| # Check which index gives the lowest error | |
| if len(position_of_real_word_indices) > 1: | |
| error = 99999 | |
| best_possible_combination = '' | |
| best_possible_idx = -1 | |
| for single_word_idx in position_of_real_word_indices: | |
| idx_above_word = single_word_idx >= len(words_estimated) | |
| if idx_above_word: | |
| continue | |
| error_word = WordMetrics.edit_distance_python( | |
| words_estimated[single_word_idx], words_real[word_idx]) | |
| if error_word < error: | |
| error = error_word*1 | |
| best_possible_combination = words_estimated[single_word_idx] | |
| best_possible_idx = single_word_idx | |
| mapped_words.append(best_possible_combination) | |
| mapped_words_indices.append(best_possible_idx) | |
| continue | |
| return mapped_words, mapped_words_indices | |
| def get_best_mapped_words(words_estimated: list, words_real: list) -> list: | |
| word_distance_matrix = get_word_distance_matrix( | |
| words_estimated, words_real) | |
| start = time.time() | |
| mapped_indices = get_best_path_from_distance_matrix(word_distance_matrix) | |
| duration_of_mapping = time.time()-start | |
| # In case or-tools doesn't converge, go to a faster, low-quality solution | |
| if len(mapped_indices) == 0 or duration_of_mapping > TIME_THRESHOLD_MAPPING+0.5: | |
| mapped_indices = (dtw_from_distance_matrix( | |
| word_distance_matrix)).path[:len(words_estimated), 1] | |
| mapped_words, mapped_words_indices = get_resulting_string( | |
| mapped_indices, words_estimated, words_real) | |
| return mapped_words, mapped_words_indices | |
| # Faster, but not optimal | |
| def get_best_mapped_words_dtw(words_estimated: list, words_real: list) -> list: | |
| from dtwalign import dtw_from_distance_matrix | |
| word_distance_matrix = get_word_distance_matrix( | |
| words_estimated, words_real) | |
| mapped_indices = dtw_from_distance_matrix( | |
| word_distance_matrix).path[:-1, 0] | |
| mapped_words, mapped_words_indices = get_resulting_string( | |
| mapped_indices, words_estimated, words_real) | |
| return mapped_words, mapped_words_indices | |
| def getWhichLettersWereTranscribedCorrectly(real_word, transcribed_word): | |
| is_leter_correct = [None]*len(real_word) | |
| for idx, letter in enumerate(real_word): | |
| if letter == transcribed_word[idx] or letter in punctuation: | |
| is_leter_correct[idx] = 1 | |
| else: | |
| is_leter_correct[idx] = 0 | |
| return is_leter_correct | |
| def parseLetterErrorsToHTML(word_real, is_leter_correct): | |
| word_colored = '' | |
| correct_color_start = '*' | |
| correct_color_end = '*' | |
| wrong_color_start = '-' | |
| wrong_color_end = '-' | |
| for idx, letter in enumerate(word_real): | |
| if is_leter_correct[idx] == 1: | |
| word_colored += correct_color_start + letter+correct_color_end | |
| else: | |
| word_colored += wrong_color_start + letter+wrong_color_end | |
| return word_colored | |