Spaces:
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Update app.py
Browse files
app.py
CHANGED
@@ -6,6 +6,7 @@ from PIL import Image
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import albumentations as A
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from albumentations.pytorch import ToTensorV2
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import numpy as np
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model = UNet(
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@@ -38,7 +39,7 @@ def process_image(image):
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return mask_pred[0, 0, :, :].numpy()
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fn=process_image,
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title="Histapathology segmentation",
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inputs=[
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@@ -64,7 +65,44 @@ demo = gr.Interface(
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# os.path.join(os.path.dirname(__file__), "images/logo.png"),
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# os.path.join(os.path.dirname(__file__), "images/tower.jpg"),
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# ],
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)
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demo.launch()
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import albumentations as A
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from albumentations.pytorch import ToTensorV2
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import numpy as np
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import shutil
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model = UNet(
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return mask_pred[0, 0, :, :].numpy()
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interface_image = gr.Interface(
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fn=process_image,
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title="Histapathology segmentation",
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inputs=[
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# os.path.join(os.path.dirname(__file__), "images/logo.png"),
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# os.path.join(os.path.dirname(__file__), "images/tower.jpg"),
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# ],
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)
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def process_slide(slide_path):
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if not slide_path.endswith("zip"):
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slide = openslide.OpenSlide(os.path.join(path, image_path))
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else: # mrxs slide files
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shutil.unpack_archive(slide_path, "cache_mrxs")
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files = os.listdir("cache_mrxs")
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slide_name = [file for file in files if file.endswith("mrxs")][0]
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slide = openslide.OpenSlide(os.path.join("cache_mrxs", slide_name))
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slide.get_thumbnail((512, 512))
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return slide
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interface_slide = gr.Interface(
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fn=process_slide,
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inputs=[
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gr.File(
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label="Input slide file (input zip for `.mrxs` files)",
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)
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],
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outputs=[
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gr.Image(
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label="Model Prediction",
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image_mode="RGB",
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height=400,
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width=400,
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)
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],
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demo = gr.TabbedInterface([interface_image, interface_slide], ["Image-to-Mask", "Slide-to-Mask"])
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demo.launch()
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