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PROTAC-Degradation-Predictor / protac_degradation_predictor /protac_dataset.py

Commit History

Fixed issue with duplicates + Experiments now rely on predefined datasets + Added experiments on simple embeddings

251060c

ribesstefano commited on Jul 31

Added experimental results on simple embeddings (one-hot cells and amino acid counts)

14c7b13

ribesstefano commited on Jul 26

Fixed bug on shuffle_embedding_prob in PROTAC_Dataset class

e1370eb

ribesstefano commited on Jul 25

Started working on cell line one-hot encoding experiments

8aec0bb

ribesstefano commited on Jul 25

Added XGBoost Optuna training + Added Ablation studies with zeroed input vectors

33f1644

ribesstefano commited on May 29

Changed ablation to input zero-valued vactors

4bf0ec2

ribesstefano commited on May 27

Added results with FP normalization removed

d8a186f

ribesstefano commited on May 27

Added ablation study with randomly sampled vectors + Started working on LightningDataModule wrapper

4e1d3f6

ribesstefano commited on May 2

Refactored experiments + fixed bug in dataset when applying scaling to val and test sets

6a5a99e

ribesstefano commited on Apr 23

Updated protac dataset to handle missing values in embedding dictionaries

4d17fea

ribesstefano commited on Apr 23

Started working on packaging the repository

5e01175

ribesstefano commited on Apr 22