Updated plotting script (but still broken, use notebook instead) aa57971 ribesstefano commited on Jul 31, 2024
Fixed issue with duplicates + Experiments now rely on predefined datasets + Added experiments on simple embeddings 251060c ribesstefano commited on Jul 31, 2024
Added experimental results on simple embeddings (one-hot cells and amino acid counts) 14c7b13 ribesstefano commited on Jul 26, 2024
Implemented cell lines one-hot and amino acid sequence count experiments ccc40da ribesstefano commited on Jul 25, 2024
Started working on cell line one-hot encoding experiments 8aec0bb ribesstefano commited on Jul 25, 2024
Fixed XGBoost prediction and added initial comparison of DNN and XGBoost distributions 7839344 ribesstefano commited on Jul 17, 2024
Started renaming splits. Added datasets in paper as separate CSV. ed339ed ribesstefano commited on Jul 16, 2024
Added XGBoost Optuna training + Added Ablation studies with zeroed input vectors 33f1644 ribesstefano commited on May 29, 2024
Added ablation study with randomly sampled vectors + Started working on LightningDataModule wrapper 4e1d3f6 ribesstefano commited on May 2, 2024
Added softmax in model + Fixed and updated some hparams + Fixed bug in tanimoto distance (it was treated as similarity) bda3015 ribesstefano commited on Apr 29, 2024
Refactored experiments + fixed bug in dataset when applying scaling to val and test sets 6a5a99e ribesstefano commited on Apr 23, 2024
Updated protac dataset to handle missing values in embedding dictionaries 4d17fea ribesstefano commited on Apr 23, 2024
refactored package code and fine running experimental code 165d38a ribesstefano commited on Apr 23, 2024
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