Hugging Face's logo

Spaces:
ailab-bio
/
PROTAC-Degradation-Predictor
Running

App Files Community
ribesstefano commited on
Commit
4ec2c08
·
1 Parent(s): aa57971

Improved plotting

Browse files
Files changed (49) hide show
  1. notebooks/plot_experimental_results.ipynb +0 -0
  2. notebooks/plot_training_curves.ipynb +0 -0
  3. notebooks/train_val_test_split.pdf +0 -0
  4. plots/aminoacidcnt_ablation_study_similarity.pdf +0 -0
  5. plots/aminoacidcnt_ablation_study_standard.pdf +0 -0
  6. plots/aminoacidcnt_ablation_study_target.pdf +0 -0
  7. plots/aminoacidcnt_performance.pdf +0 -0
  8. plots/aminoacidcnt_performance_Accuracy.pdf +0 -0
  9. plots/aminoacidcnt_performance_F1 Score.pdf +0 -0
  10. plots/aminoacidcnt_performance_Precision.pdf +0 -0
  11. plots/{old_Active_Dmax_0.6_pDC50_6.0_metrics.pdf → aminoacidcnt_performance_ROC AUC.pdf} +0 -0
  12. plots/aminoacidcnt_performance_Recall.pdf +0 -0
  13. plots/cell_line_unique_values.pdf +0 -0
  14. plots/{ablation_study_tanimoto.pdf → cellsonehot_ablation_study_similarity.pdf} +0 -0
  15. plots/cellsonehot_ablation_study_standard.pdf +0 -0
  16. plots/cellsonehot_ablation_study_target.pdf +0 -0
  17. plots/cellsonehot_performance.pdf +0 -0
  18. plots/cellsonehot_performance_Accuracy.pdf +0 -0
  19. plots/cellsonehot_performance_F1 Score.pdf +0 -0
  20. plots/cellsonehot_performance_Precision.pdf +0 -0
  21. plots/{mean_performance-cv_models_as_test.pdf → cellsonehot_performance_ROC AUC.pdf} +0 -0
  22. plots/cellsonehot_performance_Recall.pdf +0 -0
  23. plots/embedding_comparison_majority_vote.pdf +0 -0
  24. plots/embedding_comparison_mean.pdf +0 -0
  25. plots/{ablation_study_uniprot.pdf → pytorch_ablation_study_similarity.pdf} +0 -0
  26. plots/{ablation_study_random.pdf → pytorch_ablation_study_standard.pdf} +0 -0
  27. plots/pytorch_ablation_study_target.pdf +0 -0
  28. plots/pytorch_performance.pdf +0 -0
  29. plots/pytorch_performance_Accuracy.pdf +0 -0
  30. plots/pytorch_performance_F1 Score.pdf +0 -0
  31. plots/pytorch_performance_Precision.pdf +0 -0
  32. plots/{majority_vote_performance-best_models_as_test.pdf → pytorch_performance_ROC AUC.pdf} +0 -0
  33. plots/pytorch_performance_Recall.pdf +0 -0
  34. plots/summary_performance-best_models_as_test.pdf +0 -0
  35. plots/summary_performance-best_models_as_test_Accuracy.pdf +0 -0
  36. plots/{mean_performance-best_models_as_test.pdf → summary_performance-best_models_as_test_ROC AUC.pdf} +0 -0
  37. plots/training_metrics_random_best_model.pdf +0 -0
  38. plots/training_metrics_random_cv_model.pdf +0 -0
  39. plots/training_metrics_tanimoto_best_model.pdf +0 -0
  40. plots/training_metrics_tanimoto_cv_model.pdf +0 -0
  41. plots/training_metrics_uniprot_best_model.pdf +0 -0
  42. plots/training_metrics_uniprot_cv_model.pdf +0 -0
  43. plots/umap_cell_lines.pdf +0 -0
  44. plots/xgboost_performance.pdf +0 -0
  45. plots/xgboost_performance_Accuracy.pdf +0 -0
  46. plots/xgboost_performance_F1 Score.pdf +0 -0
  47. plots/xgboost_performance_Precision.pdf +0 -0
  48. plots/{majority_vote_performance-cv_models_as_test.pdf → xgboost_performance_ROC AUC.pdf} +0 -0
  49. plots/xgboost_performance_Recall.pdf +0 -0
notebooks/plot_experimental_results.ipynb CHANGED
The diff for this file is too large to render. See raw diff
 
notebooks/plot_training_curves.ipynb ADDED
The diff for this file is too large to render. See raw diff
 
notebooks/train_val_test_split.pdf DELETED
Binary file (13.9 kB)
 
plots/aminoacidcnt_ablation_study_similarity.pdf ADDED
Binary file (16.5 kB). View file
 
plots/aminoacidcnt_ablation_study_standard.pdf ADDED
Binary file (16.9 kB). View file
 
plots/aminoacidcnt_ablation_study_target.pdf ADDED
Binary file (16.9 kB). View file
 
plots/aminoacidcnt_performance.pdf ADDED
Binary file (18.6 kB). View file
 
plots/aminoacidcnt_performance_Accuracy.pdf ADDED
Binary file (16.5 kB). View file
 
plots/aminoacidcnt_performance_F1 Score.pdf ADDED
Binary file (16.1 kB). View file
 
plots/aminoacidcnt_performance_Precision.pdf ADDED
Binary file (16.2 kB). View file
 
plots/{old_Active_Dmax_0.6_pDC50_6.0_metrics.pdf → aminoacidcnt_performance_ROC AUC.pdf} RENAMED
Binary files a/plots/old_Active_Dmax_0.6_pDC50_6.0_metrics.pdf and b/plots/aminoacidcnt_performance_ROC AUC.pdf differ
 
plots/aminoacidcnt_performance_Recall.pdf ADDED
Binary file (15.8 kB). View file
 
plots/cell_line_unique_values.pdf ADDED
Binary file (19.3 kB). View file
 
plots/{ablation_study_tanimoto.pdf → cellsonehot_ablation_study_similarity.pdf} RENAMED
Binary files a/plots/ablation_study_tanimoto.pdf and b/plots/cellsonehot_ablation_study_similarity.pdf differ
 
plots/cellsonehot_ablation_study_standard.pdf ADDED
Binary file (16.5 kB). View file
 
plots/cellsonehot_ablation_study_target.pdf ADDED
Binary file (16.9 kB). View file
 
plots/cellsonehot_performance.pdf ADDED
Binary file (18.6 kB). View file
 
plots/cellsonehot_performance_Accuracy.pdf ADDED
Binary file (16.5 kB). View file
 
plots/cellsonehot_performance_F1 Score.pdf ADDED
Binary file (16.1 kB). View file
 
plots/cellsonehot_performance_Precision.pdf ADDED
Binary file (16.2 kB). View file
 
plots/{mean_performance-cv_models_as_test.pdf → cellsonehot_performance_ROC AUC.pdf} RENAMED
Binary files a/plots/mean_performance-cv_models_as_test.pdf and b/plots/cellsonehot_performance_ROC AUC.pdf differ
 
plots/cellsonehot_performance_Recall.pdf ADDED
Binary file (16.3 kB). View file
 
plots/embedding_comparison_majority_vote.pdf ADDED
Binary file (17.3 kB). View file
 
plots/embedding_comparison_mean.pdf ADDED
Binary file (17.3 kB). View file
 
plots/{ablation_study_uniprot.pdf → pytorch_ablation_study_similarity.pdf} RENAMED
Binary files a/plots/ablation_study_uniprot.pdf and b/plots/pytorch_ablation_study_similarity.pdf differ
 
plots/{ablation_study_random.pdf → pytorch_ablation_study_standard.pdf} RENAMED
Binary files a/plots/ablation_study_random.pdf and b/plots/pytorch_ablation_study_standard.pdf differ
 
plots/pytorch_ablation_study_target.pdf ADDED
Binary file (16.9 kB). View file
 
plots/pytorch_performance.pdf ADDED
Binary file (18.5 kB). View file
 
plots/pytorch_performance_Accuracy.pdf ADDED
Binary file (16.5 kB). View file
 
plots/pytorch_performance_F1 Score.pdf ADDED
Binary file (16 kB). View file
 
plots/pytorch_performance_Precision.pdf ADDED
Binary file (15.7 kB). View file
 
plots/{majority_vote_performance-best_models_as_test.pdf → pytorch_performance_ROC AUC.pdf} RENAMED
Binary files a/plots/majority_vote_performance-best_models_as_test.pdf and b/plots/pytorch_performance_ROC AUC.pdf differ
 
plots/pytorch_performance_Recall.pdf ADDED
Binary file (16.2 kB). View file
 
plots/summary_performance-best_models_as_test.pdf ADDED
Binary file (18.5 kB). View file
 
plots/summary_performance-best_models_as_test_Accuracy.pdf ADDED
Binary file (16.5 kB). View file
 
plots/{mean_performance-best_models_as_test.pdf → summary_performance-best_models_as_test_ROC AUC.pdf} RENAMED
Binary files a/plots/mean_performance-best_models_as_test.pdf and b/plots/summary_performance-best_models_as_test_ROC AUC.pdf differ
 
plots/training_metrics_random_best_model.pdf DELETED
Binary file (17.1 kB)
 
plots/training_metrics_random_cv_model.pdf DELETED
Binary file (19.7 kB)
 
plots/training_metrics_tanimoto_best_model.pdf DELETED
Binary file (17.1 kB)
 
plots/training_metrics_tanimoto_cv_model.pdf DELETED
Binary file (19.4 kB)
 
plots/training_metrics_uniprot_best_model.pdf DELETED
Binary file (17.5 kB)
 
plots/training_metrics_uniprot_cv_model.pdf DELETED
Binary file (19.7 kB)
 
plots/umap_cell_lines.pdf ADDED
Binary file (31.6 kB). View file
 
plots/xgboost_performance.pdf ADDED
Binary file (18.5 kB). View file
 
plots/xgboost_performance_Accuracy.pdf ADDED
Binary file (16.4 kB). View file
 
plots/xgboost_performance_F1 Score.pdf ADDED
Binary file (16 kB). View file
 
plots/xgboost_performance_Precision.pdf ADDED
Binary file (15.7 kB). View file
 
plots/{majority_vote_performance-cv_models_as_test.pdf → xgboost_performance_ROC AUC.pdf} RENAMED
Binary files a/plots/majority_vote_performance-cv_models_as_test.pdf and b/plots/xgboost_performance_ROC AUC.pdf differ
 
plots/xgboost_performance_Recall.pdf ADDED
Binary file (15.8 kB). View file