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Update mtdna_backend.py
Browse files- mtdna_backend.py +10 -10
mtdna_backend.py
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@@ -215,17 +215,17 @@ async def summarize_results(accession, stop_flag=None, niche_cases=None):
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print("before pipeline, len of save df: ", len(save_df))
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if niche_cases: niche_cases = ", ".join(niche_cases)
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print("this is niche case inside summarize result: ", niche_cases)
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print("do the dummy output")
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outputs = {"KU131308":{"isolate":"BRU18",
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if stop_flag is not None and stop_flag.value:
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print(f"🛑 Skipped {accession} mid-pipeline.")
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return []
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print("before pipeline, len of save df: ", len(save_df))
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if niche_cases: niche_cases = ", ".join(niche_cases)
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print("this is niche case inside summarize result: ", niche_cases)
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outputs = await pipeline_classify_sample_location_cached(accession, stop_flag, save_df, niche_cases)
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print("do the dummy output")
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# outputs = {"KU131308":{"isolate":"BRU18",
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# "country":{"brunei":['ncbi','rag_llm-The text mentions "BRU18 Brunei Borneo" in a table listing various samples...']},
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# "sample_type":{"modern":['rag_llm-The text mentions "BRU18 Brunei Borneo" in a table listing various samples']},
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# "query_cost":9.754999999999999e-05,
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# "time_cost":'24.776 seconds',
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# "source":['https://doi.org/10.1007/s00439-015-1620-z'],
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# "file_chunk":"filechunk",
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# "file_all_output":"fileoutput",
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# 'specific location':{'brunei':["some explain"]}}}
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if stop_flag is not None and stop_flag.value:
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print(f"🛑 Skipped {accession} mid-pipeline.")
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return []
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