Commit
Β·
be5cb3c
1
Parent(s):
9054cb0
Add Gradio client integration for submission uploads
Browse files
medvqa/competitions/gi-2025/task_1.py
CHANGED
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@@ -1,9 +1,10 @@
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from huggingface_hub import snapshot_download, login, whoami
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import sys
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import argparse
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import os
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import subprocess as sp
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-
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MEDVQA_SUBMIT = True if os.environ.get(
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'_MEDVQA_SUBMIT_FLAG_', 'FALSE') == 'TRUE' else False
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@@ -14,7 +15,10 @@ args, _ = parser.parse_known_args()
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os.environ["HF_HUB_ENABLE_HF_TRANSFER"] = "1"
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submission_file = "submission_task1.py"
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print("π ImageCLEFmed-MEDVQA-GI-2025 π",
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"https://github.com/simula/ImageCLEFmed-MEDVQA-GI-2025")
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@@ -27,6 +31,10 @@ except Exception:
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print("β οΈβ οΈ Not logged in to HuggingFace! Please get your login token from https://huggingface.co/settings/tokens π")
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login()
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snap_dir = snapshot_download(
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repo_id=args.repo_id, allow_patterns=[submission_file, "requirements.txt"])
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@@ -34,8 +42,8 @@ if not os.path.isfile(os.path.join(snap_dir, submission_file)):
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raise FileNotFoundError(
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f"Submission file '{submission_file}' not found in the repository!")
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if os.path.isfile(os.path.join(snap_dir,
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os.remove(os.path.join(snap_dir,
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print("π¦ Making sure of the minimum requirements to run the script π¦")
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sp.run(["python", "-m", "pip", "install", "-q"] + min_library, check=True)
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@@ -55,3 +63,11 @@ if not MEDVQA_SUBMIT:
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print("\n You can now run medvqa validate_and_submit .... command to submit the task.")
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else:
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print("π Preparing for submission π")
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from gradio_client import Client, handle_file
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from huggingface_hub import snapshot_download, login, whoami
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import sys
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import argparse
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import os
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import subprocess as sp
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import time
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MEDVQA_SUBMIT = True if os.environ.get(
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'_MEDVQA_SUBMIT_FLAG_', 'FALSE') == 'TRUE' else False
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os.environ["HF_HUB_ENABLE_HF_TRANSFER"] = "1"
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submission_file = "submission_task1.py"
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file_from_validation = "predictions_1.json"
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client = Client("SushantGautam/medvqa")
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min_library = ["datasets", "transformers", 'tqdm', "gradio_client"]
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print("π ImageCLEFmed-MEDVQA-GI-2025 π",
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"https://github.com/simula/ImageCLEFmed-MEDVQA-GI-2025")
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print("β οΈβ οΈ Not logged in to HuggingFace! Please get your login token from https://huggingface.co/settings/tokens π")
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login()
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hf_username = whoami()['name']
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assert len(hf_username) > 0, "π« HuggingFace login failed for some reason"
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current_timestamp = int(time.time())
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snap_dir = snapshot_download(
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repo_id=args.repo_id, allow_patterns=[submission_file, "requirements.txt"])
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raise FileNotFoundError(
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f"Submission file '{submission_file}' not found in the repository!")
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if os.path.isfile(os.path.join(snap_dir, file_from_validation)):
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os.remove(os.path.join(snap_dir, file_from_validation))
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print("π¦ Making sure of the minimum requirements to run the script π¦")
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sp.run(["python", "-m", "pip", "install", "-q"] + min_library, check=True)
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print("\n You can now run medvqa validate_and_submit .... command to submit the task.")
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else:
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print("π Preparing for submission π")
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file_path_to_upload = os.path.join(
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snap_dir, f"{hf_username}_{current_timestamp}_task1.py")
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os.copy(os.path.join(snap_dir, file_from_validation), file_path_to_upload)
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result = client.predict(
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file=handle_file(file_path_to_upload),
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api_name="/UploadSubmission"
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)
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print(result)
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