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device token
Browse files- api/routes/patients.py +2 -2
- api/routes/pdf.py +50 -213
- routes/pdf.py +9 -1
api/routes/patients.py
CHANGED
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@@ -357,7 +357,7 @@ async def import_patients(
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logger.info(f"Starting import request {request_id} by user {current_user.get('email')}")
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start_time = time.time()
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if current_user.get('
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logger.warning(f"Unauthorized import attempt by {current_user.get('email')}")
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raise HTTPException(
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status_code=status.HTTP_403_FORBIDDEN,
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@@ -965,7 +965,7 @@ async def add_note(
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current_user: dict = Depends(get_current_user)
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):
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logger.info(f"Adding note for patient {patient_id} by user {current_user.get('email')}")
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if current_user.get('
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logger.warning(f"Unauthorized note addition attempt by {current_user.get('email')}")
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raise HTTPException(
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status_code=status.HTTP_403_FORBIDDEN,
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logger.info(f"Starting import request {request_id} by user {current_user.get('email')}")
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start_time = time.time()
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if not any(role in current_user.get('roles', []) for role in ['admin', 'doctor']):
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logger.warning(f"Unauthorized import attempt by {current_user.get('email')}")
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raise HTTPException(
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status_code=status.HTTP_403_FORBIDDEN,
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current_user: dict = Depends(get_current_user)
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):
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logger.info(f"Adding note for patient {patient_id} by user {current_user.get('email')}")
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if not any(role in current_user.get('roles', []) for role in ['doctor', 'admin']):
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logger.warning(f"Unauthorized note addition attempt by {current_user.get('email')}")
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raise HTTPException(
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status_code=status.HTTP_403_FORBIDDEN,
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api/routes/pdf.py
CHANGED
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@@ -1,14 +1,11 @@
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from fastapi import APIRouter, HTTPException, Depends, Response
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from db.mongo import patients_collection
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from core.security import get_current_user
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from utils.helpers import calculate_age,
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from datetime import datetime
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from bson import ObjectId
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from bson.errors import InvalidId
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import subprocess
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from tempfile import TemporaryDirectory
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from string import Template
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import logging
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# Configure logging
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@@ -26,7 +23,7 @@ async def generate_patient_pdf(patient_id: str, current_user: dict = Depends(get
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logger.setLevel(logging.CRITICAL)
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try:
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if current_user.get('
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raise HTTPException(status_code=403, detail="Only clinicians can generate patient PDFs")
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# Determine if patient_id is ObjectId or fhir_id
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@@ -40,218 +37,58 @@ async def generate_patient_pdf(patient_id: str, current_user: dict = Depends(get
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if not patient:
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raise HTTPException(status_code=404, detail="Patient not found")
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#
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def prepare_table_content(items, columns, default_message):
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if not items:
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return f"\\multicolumn{{{columns}}}{{l}}{{{default_message}}} \\\\"
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content = []
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for item in items:
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row = []
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for field in item:
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value = item.get(field, "") or ""
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row.append(escape_latex_special_chars(hyphenate_long_strings(value)))
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content.append(" & ".join(row) + " \\\\")
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return "\n".join(content)
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-
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# Notes table
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notes = patient.get("notes", [])
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notes_content = prepare_table_content(
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[{
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"date": format_timestamp(n.get("date", "")),
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"type": n.get("type", ""),
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"text": n.get("text", "")
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} for n in notes],
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3,
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"No notes available"
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)
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# Conditions table
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conditions = patient.get("conditions", [])
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conditions_content = prepare_table_content(
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[{
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"id": c.get("id", ""),
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"code": c.get("code", ""),
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"status": c.get("status", ""),
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"onset": format_timestamp(c.get("onset_date", "")),
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"verification": c.get("verification_status", "")
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} for c in conditions],
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5,
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"No conditions available"
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)
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# Medications table
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medications = patient.get("medications", [])
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medications_content = prepare_table_content(
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[{
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"id": m.get("id", ""),
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"name": m.get("name", ""),
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"status": m.get("status", ""),
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"date": format_timestamp(m.get("prescribed_date", "")),
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"dosage": m.get("dosage", "")
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} for m in medications],
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5,
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"No medications available"
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)
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# Encounters table
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encounters = patient.get("encounters", [])
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)
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# LaTeX template with improved table formatting
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latex_template = Template(r"""
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\documentclass[a4paper,12pt]{article}
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\usepackage[utf8]{inputenc}
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\usepackage[T1]{fontenc}
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\usepackage{geometry}
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\geometry{margin=1in}
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\usepackage{booktabs,longtable,fancyhdr}
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\usepackage{array}
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\usepackage{microtype}
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\microtypesetup{expansion=false}
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\setlength{\headheight}{14.5pt}
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\pagestyle{fancy}
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\fancyhf{}
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\fancyhead[L]{Patient Report}
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\fancyhead[R]{Generated: \today}
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\fancyfoot[C]{\thepage}
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\begin{document}
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\begin{center}
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\Large\textbf{Patient Medical Report} \\
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\vspace{0.2cm}
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\textit{Generated on $generated_on}
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\end{center}
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\section*{Demographics}
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\begin{itemize}
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\item \textbf{FHIR ID:} $fhir_id
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\item \textbf{Full Name:} $full_name
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\item \textbf{Gender:} $gender
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\item \textbf{Date of Birth:} $dob
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\item \textbf{Age:} $age
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\item \textbf{Address:} $address
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\item \textbf{Marital Status:} $marital_status
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\item \textbf{Language:} $language
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\end{itemize}
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\section*{Clinical Notes}
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\begin{longtable}[l]{>{\raggedright\arraybackslash}p{3.5cm}>{\raggedright\arraybackslash}p{3cm}>{\raggedright\arraybackslash}p{6.5cm}}
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\caption{Clinical Notes} \\
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\toprule
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\textbf{Date} & \textbf{Type} & \textbf{Text} \\
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\midrule
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$notes
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\bottomrule
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\end{longtable}
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\section*{Conditions}
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\begin{longtable}[l]{>{\raggedright\arraybackslash}p{2cm}>{\raggedright\arraybackslash}p{3cm}>{\raggedright\arraybackslash}p{2cm}>{\raggedright\arraybackslash}p{3.5cm}>{\raggedright\arraybackslash}p{3cm}}
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\caption{Conditions} \\
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\toprule
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\textbf{ID} & \textbf{Code} & \textbf{Status} & \textbf{Onset} & \textbf{Verification} \\
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\midrule
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$conditions
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\bottomrule
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\end{longtable}
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\section*{Medications}
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\begin{longtable}[l]{>{\raggedright\arraybackslash}p{2cm}>{\raggedright\arraybackslash}p{4cm}>{\raggedright\arraybackslash}p{2cm}>{\raggedright\arraybackslash}p{3.5cm}>{\raggedright\arraybackslash}p{3cm}}
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\caption{Medications} \\
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\toprule
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\textbf{ID} & \textbf{Name} & \textbf{Status} & \textbf{Date} & \textbf{Dosage} \\
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\midrule
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$medications
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\bottomrule
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\end{longtable}
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\section*{Encounters}
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\begin{longtable}[l]{>{\raggedright\arraybackslash}p{2.5cm}>{\raggedright\arraybackslash}p{4.5cm}>{\raggedright\arraybackslash}p{2.5cm}>{\raggedright\arraybackslash}p{4.5cm}>{\raggedright\arraybackslash}p{3.5cm}}
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\caption{Encounters} \\
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\toprule
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\textbf{ID} & \textbf{Type} & \textbf{Status} & \textbf{Start} & \textbf{Provider} \\
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\midrule
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$encounters
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\bottomrule
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\end{longtable}
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\end{document}
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""")
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# Set the generated_on date to 02:54 PM CET, May 17, 2025
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generated_on = datetime.strptime("2025-05-17 14:54:00+02:00", "%Y-%m-%d %H:%M:%S%z").strftime("%A, %B %d, %Y at %I:%M %p %Z")
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latex_filled = latex_template.substitute(
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generated_on=generated_on,
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fhir_id=escape_latex_special_chars(hyphenate_long_strings(patient.get("fhir_id", "") or "")),
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full_name=escape_latex_special_chars(patient.get("full_name", "") or ""),
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gender=escape_latex_special_chars(patient.get("gender", "") or ""),
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dob=escape_latex_special_chars(patient.get("date_of_birth", "") or ""),
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age=escape_latex_special_chars(str(calculate_age(patient.get("date_of_birth", "")) or "N/A")),
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address=escape_latex_special_chars(", ".join(filter(None, [
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patient.get("address", ""),
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patient.get("city", ""),
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patient.get("state", ""),
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patient.get("postal_code", ""),
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patient.get("country", "")
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]))),
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marital_status=escape_latex_special_chars(patient.get("marital_status", "") or ""),
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language=escape_latex_special_chars(patient.get("language", "") or ""),
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notes=notes_content,
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conditions=conditions_content,
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medications=medications_content,
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encounters=encounters_content
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)
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# Compile LaTeX in a temporary directory
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with TemporaryDirectory() as tmpdir:
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tex_path = os.path.join(tmpdir, "report.tex")
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pdf_path = os.path.join(tmpdir, "report.pdf")
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with open(tex_path, "w", encoding="utf-8") as f:
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f.write(latex_filled)
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try:
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# Run latexmk twice to ensure proper table rendering
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for _ in range(2):
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result = subprocess.run(
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["latexmk", "-pdf", "-interaction=nonstopmode", tex_path],
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cwd=tmpdir,
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check=False,
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capture_output=True,
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text=True
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)
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if result.returncode != 0:
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raise HTTPException(
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status_code=500,
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detail=f"LaTeX compilation failed: stdout={result.stdout}, stderr={result.stderr}"
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)
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except subprocess.CalledProcessError as e:
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raise HTTPException(
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status_code=500,
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detail=f"LaTeX compilation failed: stdout={e.stdout}, stderr={e.stderr}"
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)
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if not os.path.exists(pdf_path):
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raise HTTPException(
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status_code=500,
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detail="PDF file was not generated"
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)
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with open(pdf_path, "rb") as f:
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pdf_bytes = f.read()
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response = Response(
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content=pdf_bytes,
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media_type="application/pdf",
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headers={"Content-Disposition": f"attachment; filename=patient_{patient.get('fhir_id', 'unknown')}_report.pdf"}
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)
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return response
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except HTTPException as http_error:
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raise http_error
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from fastapi import APIRouter, HTTPException, Depends, Response
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from db.mongo import patients_collection
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from core.security import get_current_user
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from utils.helpers import calculate_age, format_timestamp
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from datetime import datetime
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from bson import ObjectId
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from bson.errors import InvalidId
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+
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import logging
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# Configure logging
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logger.setLevel(logging.CRITICAL)
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try:
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if not any(role in current_user.get('roles', []) for role in ['doctor', 'admin']):
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raise HTTPException(status_code=403, detail="Only clinicians can generate patient PDFs")
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# Determine if patient_id is ObjectId or fhir_id
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if not patient:
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raise HTTPException(status_code=404, detail="Patient not found")
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# Get patient data
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notes = patient.get("notes", [])
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conditions = patient.get("conditions", [])
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medications = patient.get("medications", [])
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encounters = patient.get("encounters", [])
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# Set the generated_on date
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generated_on = datetime.now().strftime("%A, %B %d, %Y at %I:%M %p %Z")
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# For now, always generate a text report to avoid LaTeX dependencies
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print("📄 Generating text report (LaTeX not available)")
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# Create a simple text report
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text_report = f"""
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PATIENT MEDICAL REPORT
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Generated on {generated_on}
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DEMOGRAPHICS:
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- FHIR ID: {patient.get('fhir_id', 'N/A')}
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- Full Name: {patient.get('full_name', 'N/A')}
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- Gender: {patient.get('gender', 'N/A')}
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- Date of Birth: {patient.get('date_of_birth', 'N/A')}
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- Age: {calculate_age(patient.get('date_of_birth', '')) or 'N/A'}
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- Address: {', '.join(filter(None, [
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patient.get('address', ''),
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patient.get('city', ''),
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patient.get('state', ''),
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patient.get('postal_code', ''),
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patient.get('country', '')
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]))}
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- Marital Status: {patient.get('marital_status', 'N/A')}
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- Language: {patient.get('language', 'N/A')}
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CLINICAL NOTES:
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{chr(10).join([f"- {n.get('date', 'N/A')} | {n.get('type', 'N/A')}: {n.get('text', 'N/A')}" for n in notes]) if notes else "No notes available"}
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CONDITIONS:
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| 77 |
+
{chr(10).join([f"- {c.get('code', 'N/A')} | Status: {c.get('status', 'N/A')} | Onset: {c.get('onset_date', 'N/A')}" for c in conditions]) if conditions else "No conditions available"}
|
| 78 |
+
|
| 79 |
+
MEDICATIONS:
|
| 80 |
+
{chr(10).join([f"- {m.get('name', 'N/A')} | Status: {m.get('status', 'N/A')} | Dosage: {m.get('dosage', 'N/A')}" for m in medications]) if medications else "No medications available"}
|
| 81 |
+
|
| 82 |
+
ENCOUNTERS:
|
| 83 |
+
{chr(10).join([f"- {e.get('type', 'N/A')} | Status: {e.get('status', 'N/A')} | Provider: {e.get('service_provider', 'N/A')}" for e in encounters]) if encounters else "No encounters available"}
|
| 84 |
+
"""
|
| 85 |
+
|
| 86 |
+
response = Response(
|
| 87 |
+
content=text_report,
|
| 88 |
+
media_type="text/plain",
|
| 89 |
+
headers={"Content-Disposition": f"attachment; filename=patient_{patient.get('fhir_id', 'unknown')}_report.txt"}
|
| 90 |
)
|
| 91 |
+
return response
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|
| 92 |
|
| 93 |
except HTTPException as http_error:
|
| 94 |
raise http_error
|
routes/pdf.py
CHANGED
|
@@ -26,8 +26,16 @@ async def generate_patient_pdf(patient_id: str, current_user: dict = Depends(get
|
|
| 26 |
logger.setLevel(logging.CRITICAL)
|
| 27 |
|
| 28 |
try:
|
| 29 |
-
|
|
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|
| 30 |
raise HTTPException(status_code=403, detail="Only clinicians can generate patient PDFs")
|
|
|
|
|
|
|
| 31 |
|
| 32 |
# Determine if patient_id is ObjectId or fhir_id
|
| 33 |
try:
|
|
|
|
| 26 |
logger.setLevel(logging.CRITICAL)
|
| 27 |
|
| 28 |
try:
|
| 29 |
+
# Debug logging
|
| 30 |
+
print(f"🔍 PDF access check - User: {current_user.get('email')}")
|
| 31 |
+
print(f"🔍 User roles: {current_user.get('roles', [])}")
|
| 32 |
+
print(f"🔍 Required roles: ['doctor', 'admin']")
|
| 33 |
+
|
| 34 |
+
if not any(role in current_user.get('roles', []) for role in ['doctor', 'admin']):
|
| 35 |
+
print(f"❌ Access denied - User roles don't match required roles")
|
| 36 |
raise HTTPException(status_code=403, detail="Only clinicians can generate patient PDFs")
|
| 37 |
+
|
| 38 |
+
print(f"✅ Access granted - User has required role")
|
| 39 |
|
| 40 |
# Determine if patient_id is ObjectId or fhir_id
|
| 41 |
try:
|