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b66f09d
1
Parent(s):
fdb9371
Debugging heatmap ticklabels in HF spaces
Browse files- app.py +2 -1
- requirements.txt +3 -2
app.py
CHANGED
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@@ -62,7 +62,8 @@ def create_scoring_matrix_visual(scores,sequence,AA_vocab=AA_vocab,mutation_rang
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heat = sns.heatmap(piv,cmap='RdYlGn',linewidths=0.30,ax=ax,vmin=np.percentile(scores.avg_score,2),vmax=np.percentile(scores.avg_score,98),\
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cbar_kws={'label': 'Log likelihood ratio (mutant / starting sequence)'},annot_kws={"size": fontsize})
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heat.figure.axes[-1].yaxis.label.set_size(fontsize=int(fontsize*1.5))
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heat.set_title("Higher predicted scores (green) imply higher protein fitness",fontsize=fontsize*2, pad=40)
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heat.set_ylabel("Sequence position", fontsize = fontsize*2)
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heat.set_xlabel("Amino Acid mutation", fontsize = fontsize*2)
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heat = sns.heatmap(piv,cmap='RdYlGn',linewidths=0.30,ax=ax,vmin=np.percentile(scores.avg_score,2),vmax=np.percentile(scores.avg_score,98),\
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cbar_kws={'label': 'Log likelihood ratio (mutant / starting sequence)'},annot_kws={"size": fontsize})
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heat.figure.axes[-1].yaxis.label.set_size(fontsize=int(fontsize*1.5))
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heat.figure.axes[-1].yaxis.set_ticklabels(heat.figure.axes[-1].yaxis.get_ticklabels(), fontsize=fontsize)
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#heat.figure.axes[-1].yaxis.set_ticklabels(fontsize=fontsize)
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heat.set_title("Higher predicted scores (green) imply higher protein fitness",fontsize=fontsize*2, pad=40)
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heat.set_ylabel("Sequence position", fontsize = fontsize*2)
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heat.set_xlabel("Amino Acid mutation", fontsize = fontsize*2)
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requirements.txt
CHANGED
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@@ -1,6 +1,7 @@
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gradio
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transformers==4.17
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datasets==1.18.3
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biopython==1.78
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seaborn
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gradio
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torch
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transformers==4.17
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datasets==1.18.3
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biopython==1.78
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matplotlib==3.2.2
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seaborn==0.11.2
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