PascalNotin commited on
Commit
5d3f7a9
1 Parent(s): 53fe6a0

Fixed library bug and improved interface messages

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Files changed (1) hide show
  1. app.py +2 -1
app.py CHANGED
@@ -4,6 +4,7 @@ from transformers import PreTrainedTokenizerFast
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  import tranception
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  import datasets
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  from tranception import config, model_pytorch
 
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  import pandas as pd
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  import matplotlib.pyplot as plt
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  import seaborn as sns
@@ -116,7 +117,7 @@ examples=[
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  ['P53_HUMAN: MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPRVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD']
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  ]
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- model_size_selection = gr.Radio(label="Tranception model size", choices=["Small","Medium","Large"], value="Small")
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  protein_sequence_input = gr.Textbox(lines=1, label="Input protein sequence (see below for examples; default = RL40A_YEAST)",value="MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASKYNCDKSVCRKCYARLPPRATNCRKRKCGHTNQLRPKKKLK")
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  mutation_range_start = gr.Number(label="Start of mutation range (min value = 1)",value=1,precision=0)
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  mutation_range_end = gr.Number(label="End of mutation range (leave empty for full lenth)",value=10,precision=0)
 
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  import tranception
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  import datasets
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  from tranception import config, model_pytorch
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+ import numpy as np
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  import pandas as pd
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  import matplotlib.pyplot as plt
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  import seaborn as sns
 
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  ['P53_HUMAN: MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPRVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD']
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  ]
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+ model_size_selection = gr.Radio(label="Tranception model size (larger models are more accurate but are slower at inference)", choices=["Small","Medium","Large"], value="Small")
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  protein_sequence_input = gr.Textbox(lines=1, label="Input protein sequence (see below for examples; default = RL40A_YEAST)",value="MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASKYNCDKSVCRKCYARLPPRATNCRKRKCGHTNQLRPKKKLK")
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  mutation_range_start = gr.Number(label="Start of mutation range (min value = 1)",value=1,precision=0)
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  mutation_range_end = gr.Number(label="End of mutation range (leave empty for full lenth)",value=10,precision=0)