Update cas9attvcf.py

cas9attvcf.py

@@ -325,8 +325,13 @@ def process_gene(gene_symbol, vcf_reader, model_path):
     else:
         print("Failed to retrieve transcripts.")
 
+    output = []
+    for result in results:
+        for item in result:
+            output.append(item)
+            
     # Sort results based on prediction score (assuming score is at the 8th index)
-    sorted_results = sorted(results, key=lambda x: x[8], reverse=True)
+    sorted_results = sorted(output, key=lambda x: x[8], reverse=True)
 
     # Return the sorted output, combined gene sequences, and all exons
     return sorted_results, all_gene_sequences, all_exons