Spaces:
Sleeping
Sleeping
Commit
•
aa8a757
1
Parent(s):
e272fdd
fix
Browse files
app.py
CHANGED
@@ -145,27 +145,32 @@ if selected_model == 'Cas9':
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# Iterate over the sorted predictions to create the plot
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for i, prediction in enumerate(sorted_predictions, start=1):
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-
# Extract data for plotting
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chrom, start, end, strand, target, gRNA, pred_score = prediction
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# Set the y-value and arrow symbol based on the strand
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if strand == '1':
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y_value = positive_strand_y
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arrow_symbol = 'triangle-right'
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-
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else:
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y_value = negative_strand_y
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arrow_symbol = 'triangle-left'
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-
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fig.add_trace(go.Scatter(
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-
x=[
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y=[y_value], # Use the y_value set above for the strand
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mode='markers+text',
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marker=dict(symbol=arrow_symbol, size=10),
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name=f"gRNA: {gRNA}",
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text=f"Rank: {i}", # Place text at the marker
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hoverinfo='text',
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-
hovertext=f"Rank: {i}<br>Chromosome: {chrom}<br>Target Sequence: {target}<br>gRNA: {gRNA}<br>Start: {start}<br>End: {end}<br>Strand: {'+' if strand ==
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))
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# Update the layout of the plot
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@@ -378,27 +383,32 @@ elif selected_model == 'Cas12':
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# Iterate over the sorted predictions to create the plot
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for i, prediction in enumerate(sorted_predictions, start=1):
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-
# Extract data for plotting
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chrom, start, end, strand, target, gRNA, pred_score = prediction
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# Set the y-value and arrow symbol based on the strand
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if strand == '1':
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y_value = positive_strand_y
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arrow_symbol = 'triangle-right'
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-
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else:
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y_value = negative_strand_y
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arrow_symbol = 'triangle-left'
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-
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fig.add_trace(go.Scatter(
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-
x=[
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y=[y_value], # Use the y_value set above for the strand
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mode='markers+text',
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marker=dict(symbol=arrow_symbol, size=10),
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name=f"gRNA: {gRNA}",
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text=f"Rank: {i}", # Place text at the marker
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hoverinfo='text',
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-
hovertext=f"Rank: {i}<br>Chromosome: {chrom}<br>Target Sequence: {target}<br>gRNA: {gRNA}<br>Start: {start}<br>End: {end}<br>Strand: {'+' if strand ==
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))
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# Update the layout of the plot
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# Iterate over the sorted predictions to create the plot
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for i, prediction in enumerate(sorted_predictions, start=1):
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+
# Extract data for plotting and convert start and end to integers
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chrom, start, end, strand, target, gRNA, pred_score = prediction
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+
start, end = int(start), int(end)
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+
midpoint = (start + end) / 2
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+
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# Set the y-value and arrow symbol based on the strand
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if strand == '1':
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y_value = positive_strand_y
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arrow_symbol = 'triangle-right'
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+
# Increment the y-value for the next positive strand gRNA
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positive_strand_y += offset
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else:
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y_value = negative_strand_y
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arrow_symbol = 'triangle-left'
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+
# Decrement the y-value for the next negative strand gRNA
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negative_strand_y -= offset
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fig.add_trace(go.Scatter(
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+
x=[midpoint],
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y=[y_value], # Use the y_value set above for the strand
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mode='markers+text',
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marker=dict(symbol=arrow_symbol, size=10),
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name=f"gRNA: {gRNA}",
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text=f"Rank: {i}", # Place text at the marker
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hoverinfo='text',
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+
hovertext=f"Rank: {i}<br>Chromosome: {chrom}<br>Target Sequence: {target}<br>gRNA: {gRNA}<br>Start: {start}<br>End: {end}<br>Strand: {'+' if strand == 1 else '-'}<br>Prediction Score: {pred_score:.4f}",
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))
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# Update the layout of the plot
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# Iterate over the sorted predictions to create the plot
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for i, prediction in enumerate(sorted_predictions, start=1):
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+
# Extract data for plotting and convert start and end to integers
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chrom, start, end, strand, target, gRNA, pred_score = prediction
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+
start, end = int(start), int(end)
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+
midpoint = (start + end) / 2
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+
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# Set the y-value and arrow symbol based on the strand
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if strand == '1':
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y_value = positive_strand_y
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arrow_symbol = 'triangle-right'
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+
# Increment the y-value for the next positive strand gRNA
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+
positive_strand_y += offset
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else:
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y_value = negative_strand_y
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arrow_symbol = 'triangle-left'
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+
# Decrement the y-value for the next negative strand gRNA
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negative_strand_y -= offset
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fig.add_trace(go.Scatter(
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+
x=[midpoint],
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y=[y_value], # Use the y_value set above for the strand
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mode='markers+text',
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marker=dict(symbol=arrow_symbol, size=10),
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name=f"gRNA: {gRNA}",
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text=f"Rank: {i}", # Place text at the marker
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hoverinfo='text',
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+
hovertext=f"Rank: {i}<br>Chromosome: {chrom}<br>Target Sequence: {target}<br>gRNA: {gRNA}<br>Start: {start}<br>End: {end}<br>Strand: {'+' if strand == 1 else '-'}<br>Prediction Score: {pred_score:.4f}",
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))
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# Update the layout of the plot
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