Spaces:
Running
Running
MilesCranmer
commited on
Commit
•
f4c2ae8
1
Parent(s):
49ecfff
Preprocess Julia floats before pandas reading
Browse files- pysr/sr.py +10 -6
pysr/sr.py
CHANGED
@@ -1,5 +1,6 @@
|
|
1 |
"""Define the PySRRegressor scikit-learn interface."""
|
2 |
import copy
|
|
|
3 |
import os
|
4 |
import sys
|
5 |
import numpy as np
|
@@ -2023,7 +2024,11 @@ class PySRRegressor(MultiOutputMixin, RegressorMixin, BaseEstimator):
|
|
2023 |
cur_filename = str(self.equation_file_) + f".out{i}" + ".bkup"
|
2024 |
if not os.path.exists(cur_filename):
|
2025 |
cur_filename = str(self.equation_file_) + f".out{i}"
|
2026 |
-
|
|
|
|
|
|
|
|
|
2027 |
# Rename Complexity column to complexity:
|
2028 |
df.rename(
|
2029 |
columns={
|
@@ -2033,14 +2038,16 @@ class PySRRegressor(MultiOutputMixin, RegressorMixin, BaseEstimator):
|
|
2033 |
},
|
2034 |
inplace=True,
|
2035 |
)
|
2036 |
-
df["equation"] = df["equation"].apply(_preprocess_julia_floats)
|
2037 |
|
2038 |
all_outputs.append(df)
|
2039 |
else:
|
2040 |
filename = str(self.equation_file_) + ".bkup"
|
2041 |
if not os.path.exists(filename):
|
2042 |
filename = str(self.equation_file_)
|
2043 |
-
|
|
|
|
|
|
|
2044 |
all_outputs[-1].rename(
|
2045 |
columns={
|
2046 |
"Complexity": "complexity",
|
@@ -2049,9 +2056,6 @@ class PySRRegressor(MultiOutputMixin, RegressorMixin, BaseEstimator):
|
|
2049 |
},
|
2050 |
inplace=True,
|
2051 |
)
|
2052 |
-
all_outputs[-1]["equation"] = all_outputs[-1]["equation"].apply(
|
2053 |
-
_preprocess_julia_floats
|
2054 |
-
)
|
2055 |
|
2056 |
except FileNotFoundError:
|
2057 |
raise RuntimeError(
|
|
|
1 |
"""Define the PySRRegressor scikit-learn interface."""
|
2 |
import copy
|
3 |
+
from io import StringIO
|
4 |
import os
|
5 |
import sys
|
6 |
import numpy as np
|
|
|
2024 |
cur_filename = str(self.equation_file_) + f".out{i}" + ".bkup"
|
2025 |
if not os.path.exists(cur_filename):
|
2026 |
cur_filename = str(self.equation_file_) + f".out{i}"
|
2027 |
+
with open(cur_filename, "r") as f:
|
2028 |
+
buf = f.read()
|
2029 |
+
buf = _preprocess_julia_floats(buf)
|
2030 |
+
df = pd.read_csv(StringIO(buf))
|
2031 |
+
|
2032 |
# Rename Complexity column to complexity:
|
2033 |
df.rename(
|
2034 |
columns={
|
|
|
2038 |
},
|
2039 |
inplace=True,
|
2040 |
)
|
|
|
2041 |
|
2042 |
all_outputs.append(df)
|
2043 |
else:
|
2044 |
filename = str(self.equation_file_) + ".bkup"
|
2045 |
if not os.path.exists(filename):
|
2046 |
filename = str(self.equation_file_)
|
2047 |
+
with open(filename, "r") as f:
|
2048 |
+
buf = f.read()
|
2049 |
+
buf = _preprocess_julia_floats(buf)
|
2050 |
+
all_outputs = [pd.read_csv(StringIO(buf))]
|
2051 |
all_outputs[-1].rename(
|
2052 |
columns={
|
2053 |
"Complexity": "complexity",
|
|
|
2056 |
},
|
2057 |
inplace=True,
|
2058 |
)
|
|
|
|
|
|
|
2059 |
|
2060 |
except FileNotFoundError:
|
2061 |
raise RuntimeError(
|