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dylanglenister
commited on
Commit
·
89a41e2
1
Parent(s):
521a291
Updating session route.
Browse filesCombining chat route with it.
Splitting summarise into its own route.
- src/api/routes/chat.py +0 -134
- src/api/routes/session.py +110 -65
- src/api/routes/summarise.py +40 -0
- src/core/memory_manager.py +18 -1
- src/main.py +3 -3
- src/models/chat.py +0 -25
- src/models/session.py +23 -0
- src/models/summarise.py +14 -0
- src/services/medical_response.py +1 -1
src/api/routes/chat.py
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@@ -1,134 +0,0 @@
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# api/routes/chat.py
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import time
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from datetime import datetime, timezone
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from fastapi import APIRouter, Depends, HTTPException
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from src.core.state import MedicalState, get_state
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from src.models.chat import ChatRequest, ChatResponse, SummariseRequest
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from src.services.medical_response import generate_medical_response
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from src.services.summariser import summarise_title_with_nvidia
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from src.utils.logger import logger
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router = APIRouter(tags=["Chat"])
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@router.post("/chat", response_model=ChatResponse)
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async def chat_endpoint(
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request: ChatRequest,
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state: MedicalState = Depends(get_state)
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):
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"""
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Process a chat message, generate response, and persist short-term cache + long-term Mongo.
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"""
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start_time = time.time()
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logger().info(f"POST /chat user={request.account_id} session={request.session_id} patient={request.patient_id}")
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logger().info(f"Message: {request.message[:100]}...") # Log first 100 chars of message
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# Currently completely pointless
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#user_profile = state.memory_system.get_user(request.account_id)
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#if not user_profile:
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# state.memory_system.create_user()
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session = None
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session_id = request.session_id
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#if request.session_id != "default":
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if session_id:
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try:
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session = state.memory_system.get_session(session_id)
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except Exception as e:
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logger().error(f"Error retrieving session: {e}")
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raise HTTPException(status_code=400, detail=f"Invalid session ID ({session_id}): {str(e)}")
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if not session:
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if not request.patient_id:
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raise HTTPException(status_code=400, detail="patient_id required for new sessions")
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session = state.memory_system.create_session(
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request.account_id,
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request.patient_id,
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"New Chat"
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)
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logger().info(f"Created new session: {session.session_id}")
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session_id = session.session_id
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try:
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# Get enhanced medical context with STM + LTM semantic search + NVIDIA reasoning
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medical_context = await state.history_manager.get_enhanced_conversation_context(
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request.account_id,
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session_id,
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request.message,
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state.nvidia_rotator,
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patient_id=request.patient_id
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)
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except Exception as e:
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logger().error(f"Error getting medical context: {e}")
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logger().error(f"Request data: {request.model_dump()}")
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raise HTTPException(status_code=500, detail=f"Internal server error: {str(e)}")
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try:
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# Generate response using Gemini AI
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logger().info(f"Generating medical response using Gemini AI for user {request.account_id}")
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response = await generate_medical_response(
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request.message,
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"Medical Professional",
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"",
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state.gemini_rotator,
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medical_context
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)
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# Process and store the exchange
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try:
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await state.history_manager.process_medical_exchange(
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request.account_id,
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session_id,
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request.message,
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response,
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state.gemini_rotator,
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state.nvidia_rotator,
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patient_id=request.patient_id,
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doctor_id=request.account_id,
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session_title="New Chat"
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)
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except Exception as e:
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logger().warning(f"Failed to process medical exchange: {e}")
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# Continue without storing if there's an error
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# Calculate response time
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response_time = time.time() - start_time
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logger().info(f"Generated response in {response_time:.2f}s for user {request.account_id}")
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logger().info(f"Response length: {len(response)} characters")
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return ChatResponse(
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response=response,
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session_id=session_id,
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timestamp=datetime.now(timezone.utc).isoformat(),
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medical_context=medical_context if medical_context else None
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)
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except Exception as e:
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logger().error(f"Error in chat endpoint: {e}")
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logger().error(f"Request data: {request.model_dump()}")
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raise HTTPException(status_code=500, detail=f"Internal server error: {str(e)}")
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@router.post("/summarise")
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async def summarise_endpoint(
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req: SummariseRequest,
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state: MedicalState = Depends(get_state)
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):
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"""Summarise a text into a short 3-5 word title using NVIDIA if available."""
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try:
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title = await summarise_title_with_nvidia(
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req.text,
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state.nvidia_rotator,
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max_words=min(max(req.max_words or 5, 3), 7)
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)
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return {"title": title}
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except Exception as e:
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logger().error(f"Error summarising title: {e}")
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raise HTTPException(status_code=500, detail=str(e))
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src/api/routes/session.py
CHANGED
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@@ -1,87 +1,132 @@
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# api/routes/
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from datetime import datetime
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from fastapi import APIRouter, Depends, HTTPException
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from src.core.state import
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from src.
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from src.utils.logger import logger
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router = APIRouter(prefix="/session", tags=["Session"])
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async def create_chat_session(
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state:
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"""
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async def get_chat_session(
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session_id: str,
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state:
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):
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"""
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return session.to_dict()
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except HTTPException:
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raise
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except Exception as e:
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logger().error(f"Error getting session: {e}")
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raise HTTPException(status_code=500, detail=str(e))
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@router.
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async def list_messages_for_session(session_id: str, limit: int | None = None):
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"""List messages for a session from Mongo, verified to belong to the patient"""
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try:
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logger().info(f"GET /session/{session_id}/messages limit={limit}")
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msgs = get_session_messages(session_id, limit)
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# ensure JSON-friendly timestamps
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for m in msgs:
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if isinstance(m.get("timestamp"), datetime):
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m["timestamp"] = m["timestamp"].isoformat()
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m["_id"] = str(m["_id"]) if "_id" in m else None
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return {"messages": msgs}
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except Exception as e:
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logger().error(f"Error listing messages: {e}")
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raise HTTPException(status_code=500, detail=str(e))
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@router.delete("/{session_id}")
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async def delete_chat_session(
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session_id: str,
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state:
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):
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"""
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# Delete from MongoDB
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session_deleted = delete_session(session_id)
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except Exception as e:
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logger().error(f"Error
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raise HTTPException(status_code=
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# src/api/routes/chat.py
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from datetime import datetime, timezone
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from fastapi import APIRouter, Depends, HTTPException, status
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from src.core.state import AppState, get_state
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from src.models.session import (ChatRequest, ChatResponse, Message, Session,
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SessionCreateRequest)
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from src.services.medical_response import generate_medical_response
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from src.utils.logger import logger
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router = APIRouter(prefix="/session", tags=["Session & Chat"])
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@router.post("", response_model=Session, status_code=status.HTTP_201_CREATED)
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async def create_chat_session(
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req: SessionCreateRequest,
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state: AppState = Depends(get_state)
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):
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"""Creates a new, empty chat session."""
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logger().info(f"POST /session for patient_id={req.patient_id}")
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session = state.memory_manager.create_session(
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user_id=req.account_id,
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patient_id=req.patient_id,
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title=req.title or "New Chat"
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)
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if not session:
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raise HTTPException(status_code=status.HTTP_500_INTERNAL_SERVER_ERROR, detail="Failed to create session.")
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return session
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+
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@router.get("/{session_id}", response_model=Session)
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async def get_chat_session(
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session_id: str,
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state: AppState = Depends(get_state)
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):
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"""Retrieves a session's metadata and all its messages."""
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logger().info(f"GET /session/{session_id}")
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session = state.memory_manager.get_session(session_id)
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if not session:
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raise HTTPException(status_code=status.HTTP_404_NOT_FOUND, detail="Session not found")
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return session
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@router.delete("/{session_id}", status_code=status.HTTP_204_NO_CONTENT)
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async def delete_chat_session(
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session_id: str,
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state: AppState = Depends(get_state)
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):
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"""Deletes a chat session permanently."""
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logger().info(f"DELETE /session/{session_id}")
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# UPDATED CALL
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success = state.memory_manager.delete_session(session_id)
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if not success:
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raise HTTPException(status_code=status.HTTP_404_NOT_FOUND, detail="Session not found or already deleted")
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return None
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@router.get("/{session_id}/messages", response_model=list[Message])
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async def list_messages_for_session(
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| 62 |
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session_id: str,
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limit: int | None = None,
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state: AppState = Depends(get_state)
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):
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"""Lists all messages for a specific session from the database."""
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logger().info(f"GET /session/{session_id}/messages limit={limit}")
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| 68 |
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if not state.memory_manager.get_session(session_id):
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raise HTTPException(status_code=status.HTTP_404_NOT_FOUND, detail="Session not found")
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+
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| 71 |
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# UPDATED CALL
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| 72 |
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messages = state.memory_manager.get_session_messages(session_id, limit)
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return messages
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| 75 |
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| 76 |
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@router.post("/{session_id}/messages", response_model=ChatResponse)
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| 77 |
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async def post_chat_message(
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| 78 |
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session_id: str,
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| 79 |
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req: ChatRequest,
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| 80 |
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state: AppState = Depends(get_state)
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| 81 |
+
):
|
| 82 |
+
"""
|
| 83 |
+
Posts a message to a session, gets a generated medical response,
|
| 84 |
+
and persists the full exchange to long-term memory.
|
| 85 |
+
"""
|
| 86 |
+
logger().info(f"POST /session/{session_id}/messages")
|
| 87 |
|
| 88 |
+
# 1. Get Enhanced Context
|
| 89 |
+
try:
|
| 90 |
+
medical_context = await state.memory_manager.get_enhanced_context(
|
| 91 |
+
session_id=session_id,
|
| 92 |
+
patient_id=req.patient_id,
|
| 93 |
+
question=req.message,
|
| 94 |
+
nvidia_rotator=state.nvidia_rotator
|
| 95 |
+
)
|
| 96 |
except Exception as e:
|
| 97 |
+
logger().error(f"Error getting medical context: {e}")
|
| 98 |
+
raise HTTPException(status_code=status.HTTP_500_INTERNAL_SERVER_ERROR, detail="Failed to build medical context.")
|
| 99 |
+
|
| 100 |
+
# 2. Generate AI Response
|
| 101 |
+
try:
|
| 102 |
+
# In a real app, user role/specialty would come from the authenticated user
|
| 103 |
+
response_text = await generate_medical_response(
|
| 104 |
+
user_message=req.message,
|
| 105 |
+
user_role="Medical Professional",
|
| 106 |
+
user_specialty="",
|
| 107 |
+
rotator=state.gemini_rotator,
|
| 108 |
+
medical_context=medical_context
|
| 109 |
+
)
|
| 110 |
+
except Exception as e:
|
| 111 |
+
logger().error(f"Error generating medical response: {e}")
|
| 112 |
+
raise HTTPException(status_code=status.HTTP_500_INTERNAL_SERVER_ERROR, detail="Failed to generate AI response.")
|
| 113 |
+
|
| 114 |
+
# 3. Process and Store the Exchange
|
| 115 |
+
summary = await state.memory_manager.process_medical_exchange(
|
| 116 |
+
session_id=session_id,
|
| 117 |
+
patient_id=req.patient_id,
|
| 118 |
+
doctor_id=req.account_id,
|
| 119 |
+
question=req.message,
|
| 120 |
+
answer=response_text,
|
| 121 |
+
gemini_rotator=state.gemini_rotator,
|
| 122 |
+
nvidia_rotator=state.nvidia_rotator
|
| 123 |
+
)
|
| 124 |
+
if not summary:
|
| 125 |
+
logger().warning(f"Failed to process and store medical exchange for session {session_id}")
|
| 126 |
+
|
| 127 |
+
return ChatResponse(
|
| 128 |
+
response=response_text,
|
| 129 |
+
session_id=session_id,
|
| 130 |
+
timestamp=datetime.now(timezone.utc),
|
| 131 |
+
medical_context=medical_context
|
| 132 |
+
)
|
src/api/routes/summarise.py
ADDED
|
@@ -0,0 +1,40 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
# src/api/route/summarise.py
|
| 2 |
+
|
| 3 |
+
from fastapi import APIRouter, Depends, HTTPException, status
|
| 4 |
+
|
| 5 |
+
from src.core.state import AppState, get_state
|
| 6 |
+
from src.models.summarise import SummariseRequest, SummariseResponse
|
| 7 |
+
from src.services import summariser
|
| 8 |
+
from src.utils.logger import logger
|
| 9 |
+
|
| 10 |
+
router = APIRouter(prefix="/summarise", tags=["Utilities"])
|
| 11 |
+
|
| 12 |
+
|
| 13 |
+
@router.post("", response_model=SummariseResponse)
|
| 14 |
+
async def summarise_text_endpoint(
|
| 15 |
+
req: SummariseRequest,
|
| 16 |
+
state: AppState = Depends(get_state)
|
| 17 |
+
):
|
| 18 |
+
"""
|
| 19 |
+
Summarises a given text into a short title using an available AI model.
|
| 20 |
+
"""
|
| 21 |
+
logger().info(f"POST /summarise for text starting with: '{req.text[:50]}...'")
|
| 22 |
+
try:
|
| 23 |
+
title = await summariser.summarise_title_with_nvidia(
|
| 24 |
+
text=req.text,
|
| 25 |
+
rotator=state.nvidia_rotator,
|
| 26 |
+
max_words=req.max_words
|
| 27 |
+
)
|
| 28 |
+
if not title:
|
| 29 |
+
raise HTTPException(
|
| 30 |
+
status_code=status.HTTP_500_INTERNAL_SERVER_ERROR,
|
| 31 |
+
detail="Failed to generate a summary title."
|
| 32 |
+
)
|
| 33 |
+
|
| 34 |
+
return SummariseResponse(title=title)
|
| 35 |
+
except Exception as e:
|
| 36 |
+
logger().error(f"Error summarising title: {e}")
|
| 37 |
+
raise HTTPException(
|
| 38 |
+
status_code=status.HTTP_500_INTERNAL_SERVER_ERROR,
|
| 39 |
+
detail="An unexpected error occurred while generating the summary."
|
| 40 |
+
)
|
src/core/memory_manager.py
CHANGED
|
@@ -7,7 +7,7 @@ from src.data.repositories import patient as patient_repo
|
|
| 7 |
from src.data.repositories import session as session_repo
|
| 8 |
from src.models.account import Account
|
| 9 |
from src.models.patient import Patient
|
| 10 |
-
from src.models.session import Session
|
| 11 |
from src.services import summariser
|
| 12 |
from src.services.nvidia import nvidia_chat
|
| 13 |
from src.utils.embeddings import EmbeddingClient
|
|
@@ -62,6 +62,7 @@ class MemoryManager:
|
|
| 62 |
except ActionFailed as e:
|
| 63 |
logger().error(f"Failed to search accounts in MemoryManager: {e}")
|
| 64 |
return []
|
|
|
|
| 65 |
# --- Patient Management Facade ---
|
| 66 |
|
| 67 |
def create_patient(self, **kwargs) -> str | None:
|
|
@@ -138,6 +139,22 @@ class MemoryManager:
|
|
| 138 |
logger().error(f"Failed to get sessions for patient '{patient_id}': {e}")
|
| 139 |
return []
|
| 140 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 141 |
# --- Core Business Logic ---
|
| 142 |
|
| 143 |
async def process_medical_exchange(
|
|
|
|
| 7 |
from src.data.repositories import session as session_repo
|
| 8 |
from src.models.account import Account
|
| 9 |
from src.models.patient import Patient
|
| 10 |
+
from src.models.session import Message, Session
|
| 11 |
from src.services import summariser
|
| 12 |
from src.services.nvidia import nvidia_chat
|
| 13 |
from src.utils.embeddings import EmbeddingClient
|
|
|
|
| 62 |
except ActionFailed as e:
|
| 63 |
logger().error(f"Failed to search accounts in MemoryManager: {e}")
|
| 64 |
return []
|
| 65 |
+
|
| 66 |
# --- Patient Management Facade ---
|
| 67 |
|
| 68 |
def create_patient(self, **kwargs) -> str | None:
|
|
|
|
| 139 |
logger().error(f"Failed to get sessions for patient '{patient_id}': {e}")
|
| 140 |
return []
|
| 141 |
|
| 142 |
+
def delete_session(self, session_id: str) -> bool:
|
| 143 |
+
"""Deletes a chat session."""
|
| 144 |
+
try:
|
| 145 |
+
return session_repo.delete_session(session_id)
|
| 146 |
+
except ActionFailed as e:
|
| 147 |
+
logger().error(f"Failed to delete session '{session_id}' in MemoryManager: {e}")
|
| 148 |
+
return False
|
| 149 |
+
|
| 150 |
+
def get_session_messages(self, session_id: str, limit: int | None = None) -> list[Message]:
|
| 151 |
+
"""Gets messages from a specific chat session."""
|
| 152 |
+
try:
|
| 153 |
+
return session_repo.get_session_messages(session_id, limit)
|
| 154 |
+
except ActionFailed as e:
|
| 155 |
+
logger().error(f"Failed to get messages for session '{session_id}': {e}")
|
| 156 |
+
return []
|
| 157 |
+
|
| 158 |
# --- Core Business Logic ---
|
| 159 |
|
| 160 |
async def process_medical_exchange(
|
src/main.py
CHANGED
|
@@ -26,11 +26,11 @@ except Exception as e:
|
|
| 26 |
# Import project modules after trying to load environment variables
|
| 27 |
from src.api.routes import account as account_route
|
| 28 |
from src.api.routes import audio as audio_route
|
| 29 |
-
from src.api.routes import chat as chat_route
|
| 30 |
from src.api.routes import patient as patients_route
|
| 31 |
from src.api.routes import session as session_route
|
| 32 |
from src.api.routes import static as static_route
|
| 33 |
from src.api.routes import system as system_route
|
|
|
|
| 34 |
from src.core.state import AppState, get_state
|
| 35 |
from src.data.repositories import account as account_repo
|
| 36 |
from src.data.repositories import medical_memory as medical_memory_repo
|
|
@@ -125,12 +125,12 @@ app.add_middleware(
|
|
| 125 |
app.mount("/static", StaticFiles(directory="static"), name="static")
|
| 126 |
|
| 127 |
# Include routers
|
| 128 |
-
app.include_router(
|
| 129 |
app.include_router(session_route.router)
|
| 130 |
app.include_router(patients_route.router)
|
| 131 |
app.include_router(account_route.router)
|
|
|
|
| 132 |
app.include_router(system_route.router)
|
| 133 |
-
app.include_router(static_route.router)
|
| 134 |
app.include_router(audio_route.router)
|
| 135 |
app.include_router(emr_route.router)
|
| 136 |
|
|
|
|
| 26 |
# Import project modules after trying to load environment variables
|
| 27 |
from src.api.routes import account as account_route
|
| 28 |
from src.api.routes import audio as audio_route
|
|
|
|
| 29 |
from src.api.routes import patient as patients_route
|
| 30 |
from src.api.routes import session as session_route
|
| 31 |
from src.api.routes import static as static_route
|
| 32 |
from src.api.routes import system as system_route
|
| 33 |
+
from src.api.routes import summarise as summarise_route
|
| 34 |
from src.core.state import AppState, get_state
|
| 35 |
from src.data.repositories import account as account_repo
|
| 36 |
from src.data.repositories import medical_memory as medical_memory_repo
|
|
|
|
| 125 |
app.mount("/static", StaticFiles(directory="static"), name="static")
|
| 126 |
|
| 127 |
# Include routers
|
| 128 |
+
app.include_router(static_route.router)
|
| 129 |
app.include_router(session_route.router)
|
| 130 |
app.include_router(patients_route.router)
|
| 131 |
app.include_router(account_route.router)
|
| 132 |
+
app.include_router(summarise_route.router)
|
| 133 |
app.include_router(system_route.router)
|
|
|
|
| 134 |
app.include_router(audio_route.router)
|
| 135 |
app.include_router(emr_route.router)
|
| 136 |
|
src/models/chat.py
DELETED
|
@@ -1,25 +0,0 @@
|
|
| 1 |
-
# models/chat.py
|
| 2 |
-
|
| 3 |
-
from pydantic import BaseModel
|
| 4 |
-
|
| 5 |
-
|
| 6 |
-
class ChatRequest(BaseModel):
|
| 7 |
-
account_id: str
|
| 8 |
-
patient_id: str
|
| 9 |
-
session_id: str | None = None
|
| 10 |
-
message: str
|
| 11 |
-
|
| 12 |
-
class ChatResponse(BaseModel):
|
| 13 |
-
response: str
|
| 14 |
-
session_id: str
|
| 15 |
-
timestamp: str
|
| 16 |
-
medical_context: str | None = None
|
| 17 |
-
|
| 18 |
-
class SessionRequest(BaseModel):
|
| 19 |
-
account_id: str
|
| 20 |
-
patient_id: str
|
| 21 |
-
title: str | None = "New Chat"
|
| 22 |
-
|
| 23 |
-
class SummariseRequest(BaseModel):
|
| 24 |
-
text: str
|
| 25 |
-
max_words: int | None = 5
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
src/models/session.py
CHANGED
|
@@ -26,3 +26,26 @@ class Session(BaseMongoModel):
|
|
| 26 |
created_at: datetime
|
| 27 |
updated_at: datetime
|
| 28 |
messages: list[Message] = Field(default_factory=list)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 26 |
created_at: datetime
|
| 27 |
updated_at: datetime
|
| 28 |
messages: list[Message] = Field(default_factory=list)
|
| 29 |
+
|
| 30 |
+
# --- API Request Models ---
|
| 31 |
+
|
| 32 |
+
class SessionCreateRequest(BaseModel):
|
| 33 |
+
account_id: str
|
| 34 |
+
patient_id: str
|
| 35 |
+
title: str | None = "New Chat"
|
| 36 |
+
|
| 37 |
+
|
| 38 |
+
class ChatRequest(BaseModel):
|
| 39 |
+
"""Request model for sending a message to a session."""
|
| 40 |
+
account_id: str # For context, though session_id implies this
|
| 41 |
+
patient_id: str # For context, though session_id implies this
|
| 42 |
+
message: str
|
| 43 |
+
|
| 44 |
+
# --- API Response Models ---
|
| 45 |
+
|
| 46 |
+
class ChatResponse(BaseModel):
|
| 47 |
+
"""Response model for a chat interaction."""
|
| 48 |
+
response: str
|
| 49 |
+
session_id: str
|
| 50 |
+
timestamp: datetime
|
| 51 |
+
medical_context: str | None = None
|
src/models/summarise.py
ADDED
|
@@ -0,0 +1,14 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
# src/models/summarise.py
|
| 2 |
+
|
| 3 |
+
from pydantic import BaseModel, Field
|
| 4 |
+
|
| 5 |
+
|
| 6 |
+
class SummariseRequest(BaseModel):
|
| 7 |
+
"""Request model for the text summarisation endpoint."""
|
| 8 |
+
text: str
|
| 9 |
+
max_words: int = Field(default=5, ge=3, le=10) # Enforce reasonable limits
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
class SummariseResponse(BaseModel):
|
| 13 |
+
"""Response model for the text summarisation endpoint."""
|
| 14 |
+
title: str
|
src/services/medical_response.py
CHANGED
|
@@ -1,4 +1,4 @@
|
|
| 1 |
-
# services/medical_response.py
|
| 2 |
|
| 3 |
from src.core import prompt_builder
|
| 4 |
from src.data.medical_kb import search_medical_kb
|
|
|
|
| 1 |
+
# src/services/medical_response.py
|
| 2 |
|
| 3 |
from src.core import prompt_builder
|
| 4 |
from src.data.medical_kb import search_medical_kb
|