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dylanglenister
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Commit
·
5fe2c55
1
Parent(s):
7554b98
Moving medical models into combined model file
Browse files
src/data/repositories/medical_memory.py
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@@ -22,7 +22,7 @@ from pymongo.errors import ConnectionFailure, PyMongoError, WriteError
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from src.data.connection import (ActionFailed, Collections, get_collection,
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setup_collection)
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from src.models.
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from src.utils.logger import logger
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from src.data.connection import (ActionFailed, Collections, get_collection,
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setup_collection)
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from src.models.repositories import MedicalMemory, SemanticSearchResult
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from src.utils.logger import logger
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src/data/repositories/medical_record.py
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@@ -23,7 +23,7 @@ from pymongo.errors import ConnectionFailure, PyMongoError, WriteError
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from src.data.connection import (ActionFailed, Collections, get_collection,
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setup_collection)
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from src.models.
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from src.utils.logger import logger
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from src.data.connection import (ActionFailed, Collections, get_collection,
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setup_collection)
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from src.models.repositories import MedicalRecord
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from src.utils.logger import logger
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src/models/medical.py
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# src/models/medical.py
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from datetime import datetime
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from typing import Any
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from pydantic import BaseModel, ConfigDict
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from models.repositories import BaseMongoModel, PyObjectId
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class MedicalRecord(BaseMongoModel):
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"""A Pydantic model for a structured medical record."""
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patient_id: PyObjectId
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doctor_id: PyObjectId
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record_type: str
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details: dict[str, Any]
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created_at: datetime
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updated_at: datetime
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class MedicalMemory(BaseMongoModel):
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"""A Pydantic model for a medical memory summary, used for semantic search."""
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patient_id: PyObjectId
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doctor_id: PyObjectId
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session_id: PyObjectId | None = None
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summary: str
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embedding: list[float] | None = None
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created_at: datetime
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class SemanticSearchResult(BaseModel):
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"""A Pydantic model for the result of a semantic search."""
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summary: str
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similarity_score: float
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created_at: datetime
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session_id: PyObjectId | None = None
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model_config = ConfigDict(frozen=True, from_attributes=True)
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src/models/repositories.py
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@@ -1,7 +1,7 @@
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# src/models/repositories.py
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from datetime import datetime
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from typing import Annotated
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from pydantic import BaseModel, BeforeValidator, ConfigDict, Field
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@@ -60,3 +60,30 @@ class Session(BaseMongoModel):
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created_at: datetime
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updated_at: datetime
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messages: list[Message] = Field(default_factory=list)
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# src/models/repositories.py
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from datetime import datetime
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from typing import Annotated, Any
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from pydantic import BaseModel, BeforeValidator, ConfigDict, Field
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created_at: datetime
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updated_at: datetime
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messages: list[Message] = Field(default_factory=list)
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class MedicalRecord(BaseMongoModel):
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"""A Pydantic model for a structured medical record."""
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patient_id: PyObjectId
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doctor_id: PyObjectId
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record_type: str
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details: dict[str, Any]
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created_at: datetime
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updated_at: datetime
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class MedicalMemory(BaseMongoModel):
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"""A Pydantic model for a medical memory summary, used for semantic search."""
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patient_id: PyObjectId
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doctor_id: PyObjectId
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session_id: PyObjectId | None = None
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summary: str
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embedding: list[float] | None = None
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created_at: datetime
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class SemanticSearchResult(BaseModel):
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"""A Pydantic model for the result of a semantic search."""
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summary: str
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similarity_score: float
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created_at: datetime
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session_id: PyObjectId | None = None
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model_config = ConfigDict(frozen=True, from_attributes=True)
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tests/test_medical_memory.py
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@@ -6,7 +6,7 @@ from pymongo.errors import ConnectionFailure
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from src.data.connection import ActionFailed, Collections
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from src.data.repositories import medical_memory as medical_memory_repo
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from src.models.
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from src.utils.logger import logger
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from tests.base_test import BaseMongoTest
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from src.data.connection import ActionFailed, Collections
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from src.data.repositories import medical_memory as medical_memory_repo
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from src.models.repositories import MedicalMemory, SemanticSearchResult
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from src.utils.logger import logger
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from tests.base_test import BaseMongoTest
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tests/test_medical_record.py
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@@ -7,7 +7,7 @@ from pymongo.errors import ConnectionFailure
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from src.data.connection import ActionFailed, Collections
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from src.data.repositories import medical_record as medical_record_repo
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from src.models.
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from src.utils.logger import logger
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from tests.base_test import BaseMongoTest
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from src.data.connection import ActionFailed, Collections
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from src.data.repositories import medical_record as medical_record_repo
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from src.models.repositories import MedicalRecord
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from src.utils.logger import logger
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from tests.base_test import BaseMongoTest
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