Spaces:
Sleeping
Sleeping
JuanHernandez-uc commited on
Commit ·
d28b98f
1
Parent(s): abc4d20
add app.py
Browse files- Dockerfile +35 -0
- app.py +648 -0
- dino_chestmnist_head.pt +3 -0
- rad_dino_chestmnist_head.pt +3 -0
- requirements.txt +14 -0
- test.png +0 -0
Dockerfile
ADDED
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FROM python:3.11-slim
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ENV PYTHONDONTWRITEBYTECODE=1 \
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PYTHONUNBUFFERED=1 \
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PIP_NO_CACHE_DIR=1 \
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PORT=7860 \
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HF_HOME=/home/user/.cache/huggingface \
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TORCH_HOME=/home/user/.cache/torch \
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OMP_NUM_THREADS=1 \
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MKL_NUM_THREADS=1
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RUN apt-get update && apt-get install -y --no-install-recommends \
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ca-certificates \
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libgomp1 \
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git \
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&& rm -rf /var/lib/apt/lists/*
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RUN useradd -m -u 1000 user
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USER user
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ENV HOME=/home/user \
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PATH=/home/user/.local/bin:$PATH
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WORKDIR $HOME/app
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COPY --chown=user:user requirements.txt .
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RUN pip install --upgrade pip && pip install -r requirements.txt
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COPY --chown=user:user . .
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RUN git clone --depth 1 https://github.com/facebookresearch/dinov2.git
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EXPOSE 7860
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CMD ["sh", "-c", "uvicorn app:app --host 0.0.0.0 --port ${PORT:-7860} --workers 1"]
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app.py
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@@ -0,0 +1,648 @@
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| 1 |
+
# app.py
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| 2 |
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import io
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| 3 |
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import os
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| 4 |
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import uuid
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| 5 |
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import threading
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| 6 |
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import hashlib
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| 7 |
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from contextvars import ContextVar
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| 8 |
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from typing import Optional, Dict, Any, List
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| 9 |
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import numpy as np
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import torch
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| 12 |
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import torch.nn as nn
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| 13 |
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from PIL import Image
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| 14 |
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from huggingface_hub import hf_hub_download
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| 15 |
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from safetensors.torch import load_file
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| 16 |
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| 17 |
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from fastapi import FastAPI, UploadFile, File, Query, HTTPException
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| 18 |
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from fastapi.middleware.cors import CORSMiddleware
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| 19 |
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from fastapi.responses import JSONResponse
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| 20 |
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| 21 |
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# ============================================================
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| 22 |
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# Config
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| 23 |
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# ============================================================
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| 24 |
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DEVICE = "cuda" if torch.cuda.is_available() else "cpu"
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| 25 |
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| 26 |
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MODEL_IMG_SIZE = 518
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| 27 |
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ALLOW_ORIGINS = os.environ.get("ALLOW_ORIGINS", "*").split(",")
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| 28 |
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| 29 |
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# RAD-DINO checkpoint en HF
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| 30 |
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RAD_BACKBONE_REPO_ID = "microsoft/rad-dino"
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| 31 |
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RAD_BACKBONE_FILENAME = "backbone_compatible.safetensors"
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| 32 |
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| 33 |
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# Heads
|
| 34 |
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RAD_HEAD_CKPT_PATH = os.environ.get("RAD_HEAD_CKPT_PATH", "rad_dino_chestmnist_head.pt")
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| 35 |
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DINO_HEAD_CKPT_PATH = os.environ.get("DINO_HEAD_CKPT_PATH", "dino_chestmnist_head.pt")
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| 36 |
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| 37 |
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# Normalización
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| 38 |
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RAD_MEAN = torch.tensor([0.5307, 0.5307, 0.5307], dtype=torch.float32).view(3, 1, 1)
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| 39 |
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RAD_STD = torch.tensor([0.2583, 0.2583, 0.2583], dtype=torch.float32).view(3, 1, 1)
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| 40 |
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| 41 |
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# DINOv2 usual / ImageNet normalization
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| 42 |
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DINO_MEAN = torch.tensor([0.485, 0.456, 0.406], dtype=torch.float32).view(3, 1, 1)
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| 43 |
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DINO_STD = torch.tensor([0.229, 0.224, 0.225], dtype=torch.float32).view(3, 1, 1)
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| 44 |
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| 45 |
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DEFAULT_LABEL_NAMES = [
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| 46 |
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"atelectasis", "cardiomegaly", "effusion", "infiltration",
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| 47 |
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"mass", "nodule", "pneumonia", "pneumothorax",
|
| 48 |
+
"consolidation", "edema", "emphysema", "fibrosis",
|
| 49 |
+
"pleural", "hernia"
|
| 50 |
+
]
|
| 51 |
+
|
| 52 |
+
MODEL_CONFIGS = {
|
| 53 |
+
"rad-dino": {
|
| 54 |
+
"backbone_type": "rad-dino",
|
| 55 |
+
"head_ckpt_path": RAD_HEAD_CKPT_PATH,
|
| 56 |
+
"model_name": "rad-dino-chestmnist",
|
| 57 |
+
"mean": RAD_MEAN,
|
| 58 |
+
"std": RAD_STD,
|
| 59 |
+
},
|
| 60 |
+
"dino": {
|
| 61 |
+
"backbone_type": "dino",
|
| 62 |
+
"head_ckpt_path": DINO_HEAD_CKPT_PATH,
|
| 63 |
+
"model_name": "dino-chestmnist",
|
| 64 |
+
"mean": DINO_MEAN,
|
| 65 |
+
"std": DINO_STD,
|
| 66 |
+
},
|
| 67 |
+
}
|
| 68 |
+
|
| 69 |
+
|
| 70 |
+
# ============================================================
|
| 71 |
+
# Model definitions
|
| 72 |
+
# ============================================================
|
| 73 |
+
class MedicalHead(nn.Module):
|
| 74 |
+
def __init__(self, in_dim: int = 768, num_classes: int = 14, dropout: float = 0.1):
|
| 75 |
+
super().__init__()
|
| 76 |
+
self.drop = nn.Dropout(dropout)
|
| 77 |
+
self.fc = nn.Linear(in_dim, num_classes)
|
| 78 |
+
|
| 79 |
+
def forward(self, cls_token: torch.Tensor) -> torch.Tensor:
|
| 80 |
+
return self.fc(self.drop(cls_token))
|
| 81 |
+
|
| 82 |
+
|
| 83 |
+
def round_tensor(t: torch.Tensor, decimals: int = 4) -> torch.Tensor:
|
| 84 |
+
s = 10 ** decimals
|
| 85 |
+
return torch.round(t * s) / s
|
| 86 |
+
|
| 87 |
+
|
| 88 |
+
def preprocess_pil(pil_img: Image.Image, mean: torch.Tensor, std: torch.Tensor) -> torch.Tensor:
|
| 89 |
+
img = pil_img.convert("RGB").resize((MODEL_IMG_SIZE, MODEL_IMG_SIZE), Image.BICUBIC)
|
| 90 |
+
arr = np.array(img).astype("float32") / 255.0
|
| 91 |
+
x = torch.from_numpy(arr).permute(2, 0, 1) # [3,H,W]
|
| 92 |
+
x = (x - mean) / std
|
| 93 |
+
return x.unsqueeze(0) # [1,3,H,W]
|
| 94 |
+
|
| 95 |
+
|
| 96 |
+
# ============================================================
|
| 97 |
+
# Build backbones
|
| 98 |
+
# ============================================================
|
| 99 |
+
def ensure_local_dinov2_repo():
|
| 100 |
+
if not os.path.exists("./dinov2"):
|
| 101 |
+
raise FileNotFoundError(
|
| 102 |
+
"No encontré ./dinov2. Clona el repo primero con:\n"
|
| 103 |
+
"git clone https://github.com/facebookresearch/dinov2.git"
|
| 104 |
+
)
|
| 105 |
+
|
| 106 |
+
|
| 107 |
+
def disable_fused_attn(model: nn.Module):
|
| 108 |
+
for blk in model.blocks:
|
| 109 |
+
if hasattr(blk.attn, "fused_attn"):
|
| 110 |
+
blk.attn.fused_attn = False
|
| 111 |
+
|
| 112 |
+
|
| 113 |
+
def build_dinov2_backbone() -> nn.Module:
|
| 114 |
+
ensure_local_dinov2_repo()
|
| 115 |
+
model = torch.hub.load("./dinov2", "dinov2_vitb14", source="local")
|
| 116 |
+
model.eval().to(DEVICE)
|
| 117 |
+
disable_fused_attn(model)
|
| 118 |
+
return model
|
| 119 |
+
|
| 120 |
+
|
| 121 |
+
def build_rad_dino_backbone() -> nn.Module:
|
| 122 |
+
model = build_dinov2_backbone()
|
| 123 |
+
|
| 124 |
+
backbone_path = hf_hub_download(
|
| 125 |
+
repo_id=RAD_BACKBONE_REPO_ID,
|
| 126 |
+
filename=RAD_BACKBONE_FILENAME
|
| 127 |
+
)
|
| 128 |
+
state = load_file(backbone_path)
|
| 129 |
+
model.load_state_dict(state, strict=True)
|
| 130 |
+
model.eval().to(DEVICE)
|
| 131 |
+
disable_fused_attn(model)
|
| 132 |
+
return model
|
| 133 |
+
|
| 134 |
+
|
| 135 |
+
def build_head(head_ckpt_path: str) -> tuple[nn.Module, Dict[str, Any], List[str]]:
|
| 136 |
+
ckpt = torch.load(head_ckpt_path, map_location=DEVICE)
|
| 137 |
+
label_names = ckpt.get("label_names", DEFAULT_LABEL_NAMES)
|
| 138 |
+
num_classes = len(label_names)
|
| 139 |
+
|
| 140 |
+
head = MedicalHead(in_dim=768, num_classes=num_classes, dropout=0.1).to(DEVICE)
|
| 141 |
+
head.load_state_dict(ckpt["head_state_dict"])
|
| 142 |
+
head.eval()
|
| 143 |
+
|
| 144 |
+
return head, ckpt, label_names
|
| 145 |
+
|
| 146 |
+
|
| 147 |
+
def build_model_bundle(model_key: str, cfg: Dict[str, Any]) -> Dict[str, Any]:
|
| 148 |
+
if cfg["backbone_type"] == "rad-dino":
|
| 149 |
+
backbone = build_rad_dino_backbone()
|
| 150 |
+
elif cfg["backbone_type"] == "dino":
|
| 151 |
+
backbone = build_dinov2_backbone()
|
| 152 |
+
else:
|
| 153 |
+
raise ValueError(f"backbone_type desconocido: {cfg['backbone_type']}")
|
| 154 |
+
|
| 155 |
+
head, ckpt, label_names = build_head(cfg["head_ckpt_path"])
|
| 156 |
+
|
| 157 |
+
bundle = {
|
| 158 |
+
"key": model_key,
|
| 159 |
+
"model_name": cfg["model_name"],
|
| 160 |
+
"backbone_type": cfg["backbone_type"],
|
| 161 |
+
"backbone": backbone,
|
| 162 |
+
"head": head,
|
| 163 |
+
"head_ckpt": ckpt,
|
| 164 |
+
"label_names": label_names,
|
| 165 |
+
"mean": cfg["mean"],
|
| 166 |
+
"std": cfg["std"],
|
| 167 |
+
"num_layers": len(backbone.blocks),
|
| 168 |
+
"num_heads": getattr(backbone.blocks[0].attn, "num_heads", None),
|
| 169 |
+
"current": {
|
| 170 |
+
"hash": None,
|
| 171 |
+
"attention_cls_full": None,
|
| 172 |
+
"logit_lens_full": None,
|
| 173 |
+
},
|
| 174 |
+
"results": {},
|
| 175 |
+
"lock": threading.Lock(),
|
| 176 |
+
}
|
| 177 |
+
return bundle
|
| 178 |
+
|
| 179 |
+
|
| 180 |
+
# ============================================================
|
| 181 |
+
# Hook registration per model
|
| 182 |
+
# ============================================================
|
| 183 |
+
def register_hooks(bundle: Dict[str, Any]):
|
| 184 |
+
_attn_in_var: ContextVar[Optional[list]] = ContextVar(
|
| 185 |
+
f"_attn_in_var_{bundle['key']}", default=None
|
| 186 |
+
)
|
| 187 |
+
_tok_var: ContextVar[Optional[list]] = ContextVar(
|
| 188 |
+
f"_tok_var_{bundle['key']}", default=None
|
| 189 |
+
)
|
| 190 |
+
|
| 191 |
+
def _save_attn_input(module, inp):
|
| 192 |
+
lst = _attn_in_var.get()
|
| 193 |
+
if lst is None:
|
| 194 |
+
return
|
| 195 |
+
if len(inp) == 0 or not torch.is_tensor(inp[0]):
|
| 196 |
+
return
|
| 197 |
+
# input to attn: [B, N, D]
|
| 198 |
+
lst.append(inp[0].detach())
|
| 199 |
+
|
| 200 |
+
def _save_block_out(module, inp, out):
|
| 201 |
+
lst = _tok_var.get()
|
| 202 |
+
if lst is None:
|
| 203 |
+
return
|
| 204 |
+
if torch.is_tensor(out):
|
| 205 |
+
# block output: [B, N, D]
|
| 206 |
+
lst.append(out.detach())
|
| 207 |
+
|
| 208 |
+
attn_hooks = []
|
| 209 |
+
tok_hooks = []
|
| 210 |
+
|
| 211 |
+
for blk in bundle["backbone"].blocks:
|
| 212 |
+
if not hasattr(blk, "attn"):
|
| 213 |
+
raise RuntimeError(f"No encontré blk.attn en backbone {bundle['key']}")
|
| 214 |
+
attn_hooks.append(blk.attn.register_forward_pre_hook(_save_attn_input))
|
| 215 |
+
tok_hooks.append(blk.register_forward_hook(_save_block_out))
|
| 216 |
+
|
| 217 |
+
bundle["_attn_in_var"] = _attn_in_var
|
| 218 |
+
bundle["_tok_var"] = _tok_var
|
| 219 |
+
bundle["_attn_hooks"] = attn_hooks
|
| 220 |
+
bundle["_tok_hooks"] = tok_hooks
|
| 221 |
+
|
| 222 |
+
|
| 223 |
+
# ============================================================
|
| 224 |
+
# Build all models
|
| 225 |
+
# ============================================================
|
| 226 |
+
MODELS: Dict[str, Dict[str, Any]] = {
|
| 227 |
+
key: build_model_bundle(key, cfg)
|
| 228 |
+
for key, cfg in MODEL_CONFIGS.items()
|
| 229 |
+
}
|
| 230 |
+
|
| 231 |
+
for _bundle in MODELS.values():
|
| 232 |
+
register_hooks(_bundle)
|
| 233 |
+
|
| 234 |
+
for key, bundle in MODELS.items():
|
| 235 |
+
print(f"[server] model_key={key}")
|
| 236 |
+
print(f"[server] model_name={bundle['model_name']}")
|
| 237 |
+
print(f"[server] backbone_type={bundle['backbone_type']} device={DEVICE}")
|
| 238 |
+
print(f"[server] head_ckpt={MODEL_CONFIGS[key]['head_ckpt_path']}")
|
| 239 |
+
print(f"[server] num_layers={bundle['num_layers']} num_heads={bundle['num_heads']}")
|
| 240 |
+
print(f"[server] num_classes={len(bundle['label_names'])}")
|
| 241 |
+
if "best_val_auc" in bundle["head_ckpt"]:
|
| 242 |
+
print(f"[server] checkpoint best_val_auc={bundle['head_ckpt']['best_val_auc']:.4f}")
|
| 243 |
+
|
| 244 |
+
|
| 245 |
+
# ============================================================
|
| 246 |
+
# Inference helpers
|
| 247 |
+
# ============================================================
|
| 248 |
+
@torch.no_grad()
|
| 249 |
+
def extract_cls(backbone: nn.Module, images: torch.Tensor) -> torch.Tensor:
|
| 250 |
+
feats = backbone.forward_features(images)
|
| 251 |
+
if "x_norm_clstoken" not in feats:
|
| 252 |
+
raise RuntimeError("forward_features no devolvió 'x_norm_clstoken'.")
|
| 253 |
+
return feats["x_norm_clstoken"]
|
| 254 |
+
|
| 255 |
+
|
| 256 |
+
@torch.no_grad()
|
| 257 |
+
def compute_logit_lens_from_tokens(tokens_per_layer: List[torch.Tensor], head: nn.Module):
|
| 258 |
+
logits_list = []
|
| 259 |
+
probs_list = []
|
| 260 |
+
|
| 261 |
+
for x_l in tokens_per_layer:
|
| 262 |
+
# x_l: [B, N, D]
|
| 263 |
+
cls_l = x_l[:, 0] # [B, D]
|
| 264 |
+
logits_l = head(cls_l) # [B, C]
|
| 265 |
+
probs_l = torch.sigmoid(logits_l)
|
| 266 |
+
|
| 267 |
+
logits_list.append(logits_l.detach().cpu())
|
| 268 |
+
probs_list.append(probs_l.detach().cpu())
|
| 269 |
+
|
| 270 |
+
logits_per_layer = torch.stack(logits_list, dim=0) # [L, B, C]
|
| 271 |
+
probs_per_layer = torch.stack(probs_list, dim=0) # [L, B, C]
|
| 272 |
+
return logits_per_layer, probs_per_layer
|
| 273 |
+
|
| 274 |
+
|
| 275 |
+
@torch.no_grad()
|
| 276 |
+
def compute_cls_attention_from_inputs(backbone: nn.Module, attn_inputs: List[torch.Tensor]):
|
| 277 |
+
"""
|
| 278 |
+
Reconstruct CLS->tokens attention per layer from the input to attention.
|
| 279 |
+
Returns list of [B, H, N], one per layer.
|
| 280 |
+
"""
|
| 281 |
+
cls_attn_per_layer = []
|
| 282 |
+
|
| 283 |
+
for blk, x in zip(backbone.blocks, attn_inputs):
|
| 284 |
+
x = x.to(DEVICE) # [B, N, D]
|
| 285 |
+
|
| 286 |
+
B, N, C = x.shape
|
| 287 |
+
num_heads = blk.attn.num_heads
|
| 288 |
+
head_dim = C // num_heads
|
| 289 |
+
|
| 290 |
+
qkv = blk.attn.qkv(x) # [B, N, 3*C]
|
| 291 |
+
qkv = qkv.reshape(B, N, 3, num_heads, head_dim).permute(2, 0, 3, 1, 4)
|
| 292 |
+
q, k, v = qkv[0], qkv[1], qkv[2] # [B, H, N, Hd]
|
| 293 |
+
|
| 294 |
+
attn = (q @ k.transpose(-2, -1)) * blk.attn.scale
|
| 295 |
+
attn = attn.softmax(dim=-1)
|
| 296 |
+
|
| 297 |
+
cls_attn = attn[:, :, 0, :].detach().cpu() # [B, H, N]
|
| 298 |
+
cls_attn_per_layer.append(cls_attn)
|
| 299 |
+
|
| 300 |
+
return cls_attn_per_layer
|
| 301 |
+
|
| 302 |
+
|
| 303 |
+
def analyze_image(bundle: Dict[str, Any], pil_img: Image.Image) -> Dict[str, Any]:
|
| 304 |
+
x = preprocess_pil(pil_img, bundle["mean"], bundle["std"]).to(DEVICE)
|
| 305 |
+
|
| 306 |
+
attn_inputs = []
|
| 307 |
+
layer_tokens = []
|
| 308 |
+
|
| 309 |
+
tok_token = bundle["_tok_var"].set(layer_tokens)
|
| 310 |
+
attn_token = bundle["_attn_in_var"].set(attn_inputs)
|
| 311 |
+
|
| 312 |
+
try:
|
| 313 |
+
with torch.no_grad():
|
| 314 |
+
with bundle["lock"]:
|
| 315 |
+
cls_final = extract_cls(bundle["backbone"], x) # [1, 768]
|
| 316 |
+
logits_final = bundle["head"](cls_final) # [1, C]
|
| 317 |
+
|
| 318 |
+
probs_final = torch.sigmoid(logits_final)[0].detach().cpu()
|
| 319 |
+
probs_final = round_tensor(probs_final, 6)
|
| 320 |
+
|
| 321 |
+
if len(layer_tokens) == 0:
|
| 322 |
+
raise RuntimeError("No se capturaron tokens por capa.")
|
| 323 |
+
if len(attn_inputs) == 0:
|
| 324 |
+
raise RuntimeError("No se capturaron entradas a atención por capa.")
|
| 325 |
+
|
| 326 |
+
logits_by_layer, probs_by_layer = compute_logit_lens_from_tokens(
|
| 327 |
+
layer_tokens, bundle["head"]
|
| 328 |
+
)
|
| 329 |
+
attn_maps = compute_cls_attention_from_inputs(bundle["backbone"], attn_inputs)
|
| 330 |
+
|
| 331 |
+
# ----------------------------------------------------
|
| 332 |
+
# attention_cls_full
|
| 333 |
+
# ----------------------------------------------------
|
| 334 |
+
attn_maps2 = [a.squeeze(0) for a in attn_maps] # list of [H, N]
|
| 335 |
+
|
| 336 |
+
attn_serializable_all = []
|
| 337 |
+
attn_serializable_patches = []
|
| 338 |
+
|
| 339 |
+
for layer in attn_maps2:
|
| 340 |
+
layer_all = []
|
| 341 |
+
layer_patches = []
|
| 342 |
+
for head in layer:
|
| 343 |
+
head = round_tensor(head, 4) # [N]
|
| 344 |
+
layer_all.append(head.tolist())
|
| 345 |
+
layer_patches.append(head[1:].tolist()) # remove CLS->CLS
|
| 346 |
+
attn_serializable_all.append(layer_all)
|
| 347 |
+
attn_serializable_patches.append(layer_patches)
|
| 348 |
+
|
| 349 |
+
num_tokens_all = len(attn_serializable_all[0][0])
|
| 350 |
+
num_patch_tokens = len(attn_serializable_patches[0][0])
|
| 351 |
+
|
| 352 |
+
export_attn = {
|
| 353 |
+
"model": bundle["model_name"],
|
| 354 |
+
"attention_type": "cls_only",
|
| 355 |
+
"num_layers": len(attn_serializable_all),
|
| 356 |
+
"num_heads": len(attn_serializable_all[0]),
|
| 357 |
+
"num_tokens_all": num_tokens_all,
|
| 358 |
+
"num_patch_tokens": num_patch_tokens,
|
| 359 |
+
"cls_index": 0,
|
| 360 |
+
"attention_cls_to_all_tokens": attn_serializable_all,
|
| 361 |
+
"attention_cls_to_patches": attn_serializable_patches,
|
| 362 |
+
}
|
| 363 |
+
|
| 364 |
+
# ----------------------------------------------------
|
| 365 |
+
# logit_lens_full
|
| 366 |
+
# ----------------------------------------------------
|
| 367 |
+
export_logit = {
|
| 368 |
+
"model": bundle["model_name"],
|
| 369 |
+
"num_layers": int(logits_by_layer.shape[0]),
|
| 370 |
+
"num_classes": int(logits_by_layer.shape[-1]),
|
| 371 |
+
"class_names": bundle["label_names"],
|
| 372 |
+
"checkpoint_best_val_auc": bundle["head_ckpt"].get("best_val_auc", None),
|
| 373 |
+
"final_probs": probs_final.tolist(),
|
| 374 |
+
"logits": [],
|
| 375 |
+
"probs_by_layer": [],
|
| 376 |
+
}
|
| 377 |
+
|
| 378 |
+
for l in range(logits_by_layer.shape[0]):
|
| 379 |
+
v_logits = round_tensor(logits_by_layer[l, 0], 4)
|
| 380 |
+
v_probs = round_tensor(probs_by_layer[l, 0], 6)
|
| 381 |
+
export_logit["logits"].append(v_logits.tolist())
|
| 382 |
+
export_logit["probs_by_layer"].append(v_probs.tolist())
|
| 383 |
+
|
| 384 |
+
return {
|
| 385 |
+
"attention_cls_full": export_attn,
|
| 386 |
+
"logit_lens_full": export_logit,
|
| 387 |
+
}
|
| 388 |
+
|
| 389 |
+
finally:
|
| 390 |
+
bundle["_tok_var"].reset(tok_token)
|
| 391 |
+
bundle["_attn_in_var"].reset(attn_token)
|
| 392 |
+
layer_tokens.clear()
|
| 393 |
+
attn_inputs.clear()
|
| 394 |
+
|
| 395 |
+
|
| 396 |
+
# ============================================================
|
| 397 |
+
# FastAPI app
|
| 398 |
+
# ============================================================
|
| 399 |
+
app = FastAPI(title="ChestMNIST Explainer API (RAD-DINO + DINO)", version="2.0")
|
| 400 |
+
|
| 401 |
+
app.add_middleware(
|
| 402 |
+
CORSMiddleware,
|
| 403 |
+
allow_origins=ALLOW_ORIGINS if ALLOW_ORIGINS != ["*"] else ["*"],
|
| 404 |
+
allow_credentials=True,
|
| 405 |
+
allow_methods=["*"],
|
| 406 |
+
allow_headers=["*"],
|
| 407 |
+
)
|
| 408 |
+
|
| 409 |
+
|
| 410 |
+
def _no_store(resp: JSONResponse) -> JSONResponse:
|
| 411 |
+
resp.headers["Cache-Control"] = "no-store, no-cache, must-revalidate, max-age=0"
|
| 412 |
+
resp.headers["Pragma"] = "no-cache"
|
| 413 |
+
return resp
|
| 414 |
+
|
| 415 |
+
|
| 416 |
+
def get_model_bundle(model_key: str) -> Dict[str, Any]:
|
| 417 |
+
if model_key not in MODELS:
|
| 418 |
+
raise HTTPException(
|
| 419 |
+
status_code=404,
|
| 420 |
+
detail=f"Unknown model_key '{model_key}'. Available: {list(MODELS.keys())}"
|
| 421 |
+
)
|
| 422 |
+
return MODELS[model_key]
|
| 423 |
+
|
| 424 |
+
|
| 425 |
+
# ============================================================
|
| 426 |
+
# Root / health
|
| 427 |
+
# ============================================================
|
| 428 |
+
@app.get("/")
|
| 429 |
+
def root():
|
| 430 |
+
return {
|
| 431 |
+
"status": "ok",
|
| 432 |
+
"device": DEVICE,
|
| 433 |
+
"available_models": list(MODELS.keys()),
|
| 434 |
+
"image_size": MODEL_IMG_SIZE,
|
| 435 |
+
}
|
| 436 |
+
|
| 437 |
+
|
| 438 |
+
@app.get("/health")
|
| 439 |
+
def health():
|
| 440 |
+
return {
|
| 441 |
+
"status": "ok",
|
| 442 |
+
"device": DEVICE,
|
| 443 |
+
"available_models": list(MODELS.keys()),
|
| 444 |
+
"models": {
|
| 445 |
+
key: {
|
| 446 |
+
"model": bundle["model_name"],
|
| 447 |
+
"num_layers": bundle["num_layers"],
|
| 448 |
+
"num_heads": bundle["num_heads"],
|
| 449 |
+
"num_classes": len(bundle["label_names"]),
|
| 450 |
+
"class_names": bundle["label_names"],
|
| 451 |
+
"checkpoint_best_val_auc": bundle["head_ckpt"].get("best_val_auc", None),
|
| 452 |
+
"has_current": bundle["current"]["attention_cls_full"] is not None,
|
| 453 |
+
}
|
| 454 |
+
for key, bundle in MODELS.items()
|
| 455 |
+
}
|
| 456 |
+
}
|
| 457 |
+
|
| 458 |
+
|
| 459 |
+
@app.get("/health/{model_key}")
|
| 460 |
+
def health_model(model_key: str):
|
| 461 |
+
bundle = get_model_bundle(model_key)
|
| 462 |
+
return {
|
| 463 |
+
"status": "ok",
|
| 464 |
+
"device": DEVICE,
|
| 465 |
+
"model_key": model_key,
|
| 466 |
+
"model": bundle["model_name"],
|
| 467 |
+
"image_size": MODEL_IMG_SIZE,
|
| 468 |
+
"num_layers": bundle["num_layers"],
|
| 469 |
+
"num_heads": bundle["num_heads"],
|
| 470 |
+
"num_classes": len(bundle["label_names"]),
|
| 471 |
+
"class_names": bundle["label_names"],
|
| 472 |
+
"checkpoint_best_val_auc": bundle["head_ckpt"].get("best_val_auc", None),
|
| 473 |
+
"has_current": bundle["current"]["attention_cls_full"] is not None,
|
| 474 |
+
}
|
| 475 |
+
|
| 476 |
+
|
| 477 |
+
# ============================================================
|
| 478 |
+
# Legacy analyze with stored jobs
|
| 479 |
+
# ============================================================
|
| 480 |
+
@app.post("/analyze/{model_key}")
|
| 481 |
+
async def analyze(
|
| 482 |
+
model_key: str,
|
| 483 |
+
file: UploadFile = File(...),
|
| 484 |
+
store: int = Query(0, description="1 => guarda resultados y entrega endpoints /results/{model_key}/{id}/..."),
|
| 485 |
+
):
|
| 486 |
+
bundle = get_model_bundle(model_key)
|
| 487 |
+
|
| 488 |
+
if not file.content_type or not file.content_type.startswith("image/"):
|
| 489 |
+
raise HTTPException(status_code=400, detail="Please upload an image file.")
|
| 490 |
+
|
| 491 |
+
raw = await file.read()
|
| 492 |
+
try:
|
| 493 |
+
img = Image.open(io.BytesIO(raw)).convert("RGB")
|
| 494 |
+
except Exception:
|
| 495 |
+
raise HTTPException(status_code=400, detail="Could not decode image.")
|
| 496 |
+
|
| 497 |
+
try:
|
| 498 |
+
out = analyze_image(bundle, img)
|
| 499 |
+
except Exception as e:
|
| 500 |
+
raise HTTPException(status_code=500, detail=f"Model inference failed: {e}")
|
| 501 |
+
|
| 502 |
+
if store == 1:
|
| 503 |
+
job_id = str(uuid.uuid4())
|
| 504 |
+
bundle["results"][job_id] = out
|
| 505 |
+
return {
|
| 506 |
+
"model_key": model_key,
|
| 507 |
+
"job_id": job_id,
|
| 508 |
+
"endpoints": {
|
| 509 |
+
"attention_cls_full": f"/results/{model_key}/{job_id}/attention_cls_full.json",
|
| 510 |
+
"logit_lens_full": f"/results/{model_key}/{job_id}/logit_lens_full.json",
|
| 511 |
+
}
|
| 512 |
+
}
|
| 513 |
+
|
| 514 |
+
return out
|
| 515 |
+
|
| 516 |
+
|
| 517 |
+
@app.get("/results/{model_key}/{job_id}/attention_cls_full.json")
|
| 518 |
+
def get_attention(model_key: str, job_id: str):
|
| 519 |
+
bundle = get_model_bundle(model_key)
|
| 520 |
+
if job_id not in bundle["results"]:
|
| 521 |
+
raise HTTPException(status_code=404, detail="job_id not found")
|
| 522 |
+
return _no_store(JSONResponse(bundle["results"][job_id]["attention_cls_full"]))
|
| 523 |
+
|
| 524 |
+
|
| 525 |
+
@app.get("/results/{model_key}/{job_id}/logit_lens_full.json")
|
| 526 |
+
def get_logit(model_key: str, job_id: str):
|
| 527 |
+
bundle = get_model_bundle(model_key)
|
| 528 |
+
if job_id not in bundle["results"]:
|
| 529 |
+
raise HTTPException(status_code=404, detail="job_id not found")
|
| 530 |
+
return _no_store(JSONResponse(bundle["results"][job_id]["logit_lens_full"]))
|
| 531 |
+
|
| 532 |
+
|
| 533 |
+
# ============================================================
|
| 534 |
+
# Preferred: current endpoints per model
|
| 535 |
+
# ============================================================
|
| 536 |
+
@app.post("/analyze_current/{model_key}")
|
| 537 |
+
async def analyze_current(model_key: str, file: UploadFile = File(...)):
|
| 538 |
+
bundle = get_model_bundle(model_key)
|
| 539 |
+
|
| 540 |
+
if not file.content_type or not file.content_type.startswith("image/"):
|
| 541 |
+
raise HTTPException(status_code=400, detail="Please upload an image file.")
|
| 542 |
+
|
| 543 |
+
raw = await file.read()
|
| 544 |
+
img_hash = hashlib.sha256(raw).hexdigest()
|
| 545 |
+
|
| 546 |
+
if bundle["current"]["hash"] == img_hash and bundle["current"]["attention_cls_full"] is not None:
|
| 547 |
+
return {"status": "unchanged", "hash": img_hash, "model_key": model_key}
|
| 548 |
+
|
| 549 |
+
try:
|
| 550 |
+
img = Image.open(io.BytesIO(raw)).convert("RGB")
|
| 551 |
+
except Exception:
|
| 552 |
+
raise HTTPException(status_code=400, detail="Could not decode image.")
|
| 553 |
+
|
| 554 |
+
try:
|
| 555 |
+
out = analyze_image(bundle, img)
|
| 556 |
+
except Exception as e:
|
| 557 |
+
raise HTTPException(status_code=500, detail=f"Model inference failed: {e}")
|
| 558 |
+
|
| 559 |
+
bundle["current"]["hash"] = img_hash
|
| 560 |
+
bundle["current"]["attention_cls_full"] = out["attention_cls_full"]
|
| 561 |
+
bundle["current"]["logit_lens_full"] = out["logit_lens_full"]
|
| 562 |
+
|
| 563 |
+
return {"status": "ok", "hash": img_hash, "model_key": model_key}
|
| 564 |
+
|
| 565 |
+
|
| 566 |
+
@app.get("/{model_key}/attention_cls_full.json")
|
| 567 |
+
def current_attention(model_key: str):
|
| 568 |
+
bundle = get_model_bundle(model_key)
|
| 569 |
+
|
| 570 |
+
if bundle["current"]["attention_cls_full"] is None:
|
| 571 |
+
raise HTTPException(
|
| 572 |
+
status_code=404,
|
| 573 |
+
detail=f"No current attention file for '{model_key}'. POST /analyze_current/{model_key} first."
|
| 574 |
+
)
|
| 575 |
+
return _no_store(JSONResponse(bundle["current"]["attention_cls_full"]))
|
| 576 |
+
|
| 577 |
+
|
| 578 |
+
@app.get("/{model_key}/logit_lens_full.json")
|
| 579 |
+
def current_logit(model_key: str):
|
| 580 |
+
bundle = get_model_bundle(model_key)
|
| 581 |
+
|
| 582 |
+
if bundle["current"]["logit_lens_full"] is None:
|
| 583 |
+
raise HTTPException(
|
| 584 |
+
status_code=404,
|
| 585 |
+
detail=f"No current logit file for '{model_key}'. POST /analyze_current/{model_key} first."
|
| 586 |
+
)
|
| 587 |
+
return _no_store(JSONResponse(bundle["current"]["logit_lens_full"]))
|
| 588 |
+
|
| 589 |
+
|
| 590 |
+
# ============================================================
|
| 591 |
+
# Optional backward-compatible aliases for RAD-DINO
|
| 592 |
+
# ============================================================
|
| 593 |
+
@app.post("/analyze_current")
|
| 594 |
+
async def analyze_current_rad_default(file: UploadFile = File(...)):
|
| 595 |
+
return await analyze_current("rad-dino", file)
|
| 596 |
+
|
| 597 |
+
|
| 598 |
+
@app.get("/attention_cls_full.json")
|
| 599 |
+
def current_attention_rad_default():
|
| 600 |
+
return current_attention("rad-dino")
|
| 601 |
+
|
| 602 |
+
|
| 603 |
+
@app.get("/logit_lens_full.json")
|
| 604 |
+
def current_logit_rad_default():
|
| 605 |
+
return current_logit("rad-dino")
|
| 606 |
+
|
| 607 |
+
|
| 608 |
+
@app.post("/analyze")
|
| 609 |
+
async def analyze_rad_default(
|
| 610 |
+
file: UploadFile = File(...),
|
| 611 |
+
store: int = Query(0, description="1 => guarda resultados"),
|
| 612 |
+
):
|
| 613 |
+
return await analyze("rad-dino", file, store)
|
| 614 |
+
|
| 615 |
+
|
| 616 |
+
# ============================================================
|
| 617 |
+
# Smoke test
|
| 618 |
+
# ============================================================
|
| 619 |
+
def smoke_test_local_image(image_path: str, model_key: str = "rad-dino"):
|
| 620 |
+
if not os.path.exists(image_path):
|
| 621 |
+
raise FileNotFoundError(f"No existe la imagen: {image_path}")
|
| 622 |
+
|
| 623 |
+
bundle = get_model_bundle(model_key)
|
| 624 |
+
img = Image.open(image_path).convert("RGB")
|
| 625 |
+
out = analyze_image(bundle, img)
|
| 626 |
+
|
| 627 |
+
print(f"\n[smoke test] model_key={model_key} OK")
|
| 628 |
+
print("[smoke test] capas:", out["attention_cls_full"]["num_layers"])
|
| 629 |
+
print("[smoke test] heads:", out["attention_cls_full"]["num_heads"])
|
| 630 |
+
print("[smoke test] patch tokens:", out["attention_cls_full"]["num_patch_tokens"])
|
| 631 |
+
|
| 632 |
+
final_probs = out["logit_lens_full"]["final_probs"]
|
| 633 |
+
pairs = sorted(zip(bundle["label_names"], final_probs), key=lambda t: t[1], reverse=True)
|
| 634 |
+
|
| 635 |
+
print("\nTop-5 predicciones:")
|
| 636 |
+
for name, p in pairs[:5]:
|
| 637 |
+
print(f" {name:<15} {p:.4f}")
|
| 638 |
+
|
| 639 |
+
|
| 640 |
+
if __name__ == "__main__":
|
| 641 |
+
test_path = os.environ.get("TEST_IMAGE_PATH", "").strip()
|
| 642 |
+
test_model = os.environ.get("TEST_MODEL_KEY", "rad-dino").strip()
|
| 643 |
+
|
| 644 |
+
if test_path:
|
| 645 |
+
smoke_test_local_image(test_path, test_model)
|
| 646 |
+
|
| 647 |
+
import uvicorn
|
| 648 |
+
uvicorn.run("app:app", host="0.0.0.0", port=7860, reload=False)
|
dino_chestmnist_head.pt
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:12e5409624f3333ac9cc00402d0d84d2a58bfd62aac0462dc3fe33bbda14c1fa
|
| 3 |
+
size 133769
|
rad_dino_chestmnist_head.pt
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:b570912198f3cdf00fe2b01b7cae88cdc13539245173e7a13f665f4a241f5873
|
| 3 |
+
size 45613
|
requirements.txt
ADDED
|
@@ -0,0 +1,14 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
--extra-index-url https://download.pytorch.org/whl/cpu
|
| 2 |
+
|
| 3 |
+
fastapi==0.115.6
|
| 4 |
+
uvicorn[standard]==0.30.6
|
| 5 |
+
python-multipart==0.0.9
|
| 6 |
+
|
| 7 |
+
torch==2.5.1
|
| 8 |
+
torchvision==0.20.1
|
| 9 |
+
timm==0.9.16
|
| 10 |
+
|
| 11 |
+
pillow==10.4.0
|
| 12 |
+
numpy==2.1.3
|
| 13 |
+
huggingface-hub==0.24.7
|
| 14 |
+
safetensors==0.4.5
|
test.png
ADDED
|