user permissions

Dockerfile

@@ -16,11 +16,22 @@ USER root
 #
 #CMD ["uvicorn", "main:app", "--host", "0.0.0.0", "--port", "7860"]
 
+# Set up a new user named "user" with user ID 1000
+RUN useradd -m -u 1000 user
+
+# Switch to the "user" user
+USER user
+
+# Set home to the user's home directory
+ENV HOME=/home/user \
+	PATH=/home/user/.local/bin:$PATH
+
+
 WORKDIR $HOME/app
 
 
-RUN mkdir -p /data
-RUN chmod 777 /data
+#RUN mkdir -p /data
+#RUN chmod 777 /data
 #RUN useradd -m -u 1000 user
 #USER user
 # Copy the current directory contents into the container at $HOME/app setting the owner to the user

main.py

@@ -61,7 +61,7 @@ def run_leap(fileName, path):
     os.system("tleap -f "+path+"leap.in >> "+path+"leap.out")
 
 def convert_to_amber_format(pdbName):
-    fileName, path = pdbName+'.pdb', '/data/'
+    fileName, path = pdbName+'.pdb', './'
     os.system("pdb4amber -i "+fileName+" -p -y -o "+path+"4amb.pdb -l "+path+"pdb4amber_protein.log")
     run_leap(fileName, path)
     traj = pt.iterload(path+'exp.crd', top = path+'exp.top')