|
|
|
### Summary for Dashboard Navigation |
|
|
|
This tool helps you to explore and analyze radiomics data extracted from the segmentations. You can apply various heuristics to filter out problematic data, and visualize the results. |
|
|
|
#### Navigation and Features: |
|
|
|
**Page Selection**: |
|
- **Summary**: Shows the summary in pass percentage of each heurisitic as if applied individually. |
|
- **Plots**: Shows detailed visualizations and data filtering options. |
|
|
|
**Filters**: |
|
- **Radiomics Feature**: Allows selection from a variety of radiomics features such as Volume from Voxel Summation, Mean, Variance, etc. for specific analytical criteria. |
|
- **Body Part**: Enables targeted analysis by selecting the desired anatomical region. |
|
- **Laterality**: Provides the ability to specify the laterality (left or right) for applicable organ systems. |
|
- **Segmentation Completeness**: Offers a dropdown menu to filter segmentations based on their completion status. |
|
- **Laterality Check**: Includes a dropdown menu to assess the pass/fail status of laterality checks. |
|
- **Minimum of 5 mL**: Facilitates filtering of segmentations with a volume of at least 5 milliliters, classified as either passed or failed. |
|
- **Connected Volumes**: Lets users set a threshold for the maximum number of connected components they wish to allow in their analysis. |
|
- **Voxel Number**: Provides a slider bar to filter data based on a range of voxel numbers present in the imaging data. |
|
- **Radiomics Feature Values**: Allows users to set a range for values of selected radiomics features to refine analysis. |
|
- **Select column to sort by**: Enables users to organize the displayed data by sorting any column present within it. |
|
- **Sort in descending order**: Gives users the option to sort data in either descending or ascending order. |
|
- **Page Number**: Allows users to navigate through the dataset. Only 10 rows are displayed at a time for easy viewing. |
|
- **Download the filtered dataset**: Provides the option to download the dataset as a CSV file after applying the desired filters. |
|
|
|
**Filtered Data Display**: |
|
- Views a paginated table of filtered data. Please use 'sortby' filter in the sidebar to sort the underlying data. |
|
- Includes direct links to the OHIF viewer for each StudyInstanceUID. |
|
- Use StudyInstanceUID in combination with Source CT scan's seriesNumber to view the scan of interest. |
|
|
|
**Visualizations**: |
|
- **Violin Plots**: Shows the distribution of the standard deviation of the selected radiomics feature before and after filtering. |
|
- **[UpSet Plots](https://ieeexplore.ieee.org/document/6876017)**: Visualize intersections of passed and failed qualitative checks. |
|
|
|
#### Using the Dashboard: |
|
|
|
1. **Select the desired page** from the sidebar. |
|
2. **Apply filters** as needed using the sidebar options to narrow down your dataset. |
|
|
|
- **Note**: Please change to a different bodyPart to reset the filters or when you encounter an error message, while we continue improving this dashboard. |
|
|
|
3. **View and analyze the data** in the main panel through tables and plots. |
|
4. **Download the filtered data** for offline analysis. |