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Update
Browse files- .gitignore +162 -0
- app.py +137 -3
- papers.py +137 -0
- requirements.txt +6 -0
- style.css +15 -5
.gitignore
ADDED
@@ -0,0 +1,162 @@
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1 |
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.ragatouille/
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# Byte-compiled / optimized / DLL files
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__pycache__/
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+
*.py[cod]
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*$py.class
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# C extensions
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*.so
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+
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+
# Distribution / packaging
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12 |
+
.Python
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13 |
+
build/
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+
develop-eggs/
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15 |
+
dist/
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+
downloads/
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17 |
+
eggs/
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+
.eggs/
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+
lib/
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lib64/
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parts/
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sdist/
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var/
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+
wheels/
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share/python-wheels/
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*.egg-info/
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.installed.cfg
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*.egg
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+
MANIFEST
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30 |
+
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# PyInstaller
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32 |
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# Usually these files are written by a python script from a template
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33 |
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# before PyInstaller builds the exe, so as to inject date/other infos into it.
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34 |
+
*.manifest
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35 |
+
*.spec
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36 |
+
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37 |
+
# Installer logs
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38 |
+
pip-log.txt
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39 |
+
pip-delete-this-directory.txt
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40 |
+
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41 |
+
# Unit test / coverage reports
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42 |
+
htmlcov/
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43 |
+
.tox/
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44 |
+
.nox/
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45 |
+
.coverage
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46 |
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.coverage.*
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47 |
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.cache
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48 |
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nosetests.xml
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49 |
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coverage.xml
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50 |
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*.cover
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51 |
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*.py,cover
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52 |
+
.hypothesis/
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53 |
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.pytest_cache/
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+
cover/
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55 |
+
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+
# Translations
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57 |
+
*.mo
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+
*.pot
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59 |
+
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60 |
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# Django stuff:
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61 |
+
*.log
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62 |
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local_settings.py
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db.sqlite3
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db.sqlite3-journal
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# Flask stuff:
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67 |
+
instance/
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68 |
+
.webassets-cache
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69 |
+
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70 |
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# Scrapy stuff:
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71 |
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.scrapy
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72 |
+
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# Sphinx documentation
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74 |
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docs/_build/
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75 |
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# PyBuilder
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.pybuilder/
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target/
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# Jupyter Notebook
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.ipynb_checkpoints
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# IPython
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profile_default/
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ipython_config.py
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# pyenv
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# For a library or package, you might want to ignore these files since the code is
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# intended to run in multiple environments; otherwise, check them in:
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# .python-version
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# pipenv
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# According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
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# However, in case of collaboration, if having platform-specific dependencies or dependencies
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# having no cross-platform support, pipenv may install dependencies that don't work, or not
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# install all needed dependencies.
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#Pipfile.lock
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# poetry
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# Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
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# This is especially recommended for binary packages to ensure reproducibility, and is more
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# commonly ignored for libraries.
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# https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
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#poetry.lock
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# pdm
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# Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
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#pdm.lock
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# pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it
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# in version control.
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# https://pdm.fming.dev/#use-with-ide
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.pdm.toml
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# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
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__pypackages__/
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# Celery stuff
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celerybeat-schedule
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celerybeat.pid
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# SageMath parsed files
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*.sage.py
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# Environments
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.env
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.venv
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env/
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venv/
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ENV/
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env.bak/
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venv.bak/
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# Spyder project settings
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134 |
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.spyderproject
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.spyproject
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# Rope project settings
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138 |
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.ropeproject
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# mkdocs documentation
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/site
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# mypy
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.mypy_cache/
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.dmypy.json
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dmypy.json
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147 |
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# Pyre type checker
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149 |
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.pyre/
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# pytype static type analyzer
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.pytype/
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# Cython debug symbols
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cython_debug/
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156 |
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157 |
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# PyCharm
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158 |
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# JetBrains specific template is maintained in a separate JetBrains.gitignore that can
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# be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
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# and can be added to the global gitignore or merged into this file. For a more nuclear
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161 |
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# option (not recommended) you can uncomment the following to ignore the entire idea folder.
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#.idea/
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app.py
CHANGED
@@ -1,9 +1,143 @@
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#!/usr/bin/env python
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import gradio as gr
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-
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if __name__ == "__main__":
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demo.queue().launch()
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#!/usr/bin/env python
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import gradio as gr
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import pandas as pd
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from papers import PaperList
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DESCRIPTION = "# ICLR 2024 Papers"
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paper_list = PaperList()
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DEFAULT_COLUMNS = [
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"Title",
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"Type",
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"Paper page",
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"OpenReview",
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"GitHub",
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"Spaces",
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"Models",
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"Datasets",
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"claimed",
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]
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def update_num_papers(df: pd.DataFrame) -> str:
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return f"{len(df)} / {len(paper_list.df_raw)} ({len(df[df['claimed'].str.contains('✅')])} claimed)"
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def update_df(
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title_search_query: str,
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abstract_search_query: str,
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max_num_to_retrieve: int,
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filter_names: list,
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presentation_type: str,
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column_names: list[str],
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) -> pd.DataFrame:
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return gr.DataFrame(
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value=paper_list.search(
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title_search_query,
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abstract_search_query,
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max_num_to_retrieve,
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filter_names,
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presentation_type,
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column_names,
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),
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datatype=paper_list.get_column_datatypes(column_names),
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)
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with gr.Blocks(css="style.css") as demo:
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gr.Markdown(DESCRIPTION)
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with gr.Group():
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search_title = gr.Textbox(label="Search title")
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with gr.Row():
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with gr.Column(scale=4):
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search_abstract = gr.Textbox(
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label="Search abstract",
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info="The result may not be accurate as the abstract does not contain all the information.",
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)
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with gr.Column(scale=1):
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max_num_to_retrieve = gr.Slider(
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label="Max number to retrieve",
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info="This is used only for search on abstracts.",
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minimum=1,
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maximum=len(paper_list.df_raw),
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step=1,
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value=100,
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)
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filter_names = gr.CheckboxGroup(
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label="Filter",
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choices=[
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"Paper page",
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"GitHub",
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"Space",
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"Model",
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"Dataset",
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],
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)
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presentation_type = gr.Radio(
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label="Presentation Type",
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choices=["(ALL)", "Oral", "Spotlight Poster", "Poster"],
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value="(ALL)",
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)
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column_names = gr.CheckboxGroup(label="Columns", choices=paper_list.get_column_names(), value=DEFAULT_COLUMNS)
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num_papers = gr.Textbox(
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label="Number of papers", value=update_num_papers(paper_list.df_prettified), interactive=False
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)
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df = gr.Dataframe(
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value=paper_list.df_prettified,
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datatype=paper_list.get_column_datatypes(paper_list.get_column_names()),
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type="pandas",
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row_count=(0, "dynamic"),
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interactive=False,
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height=1000,
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elem_id="table",
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wrap=True,
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)
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inputs = [
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search_title,
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search_abstract,
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max_num_to_retrieve,
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filter_names,
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presentation_type,
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column_names,
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]
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gr.on(
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triggers=[
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search_title.submit,
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search_abstract.submit,
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filter_names.input,
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presentation_type.input,
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column_names.input,
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],
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fn=update_df,
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inputs=inputs,
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outputs=df,
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api_name=False,
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).then(
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fn=update_num_papers,
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inputs=df,
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125 |
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outputs=num_papers,
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126 |
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queue=False,
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127 |
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api_name=False,
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)
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demo.load(
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fn=update_df,
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inputs=inputs,
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132 |
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outputs=df,
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133 |
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api_name=False,
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134 |
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).then(
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135 |
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fn=update_num_papers,
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136 |
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inputs=df,
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137 |
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outputs=num_papers,
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138 |
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queue=False,
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139 |
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api_name=False,
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140 |
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)
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141 |
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142 |
if __name__ == "__main__":
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143 |
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demo.queue(api_open=False).launch(show_api=False)
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papers.py
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import operator
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import datasets
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4 |
+
import pandas as pd
|
5 |
+
from huggingface_hub import HfApi
|
6 |
+
from ragatouille import RAGPretrainedModel
|
7 |
+
|
8 |
+
api = HfApi()
|
9 |
+
|
10 |
+
INDEX_DIR_PATH = ".ragatouille/colbert/indexes/ICLR2024-papers-abstract-index/"
|
11 |
+
api.snapshot_download(
|
12 |
+
repo_id="ICLR2024/ICLR2024-papers-abstract-index",
|
13 |
+
repo_type="dataset",
|
14 |
+
local_dir=INDEX_DIR_PATH,
|
15 |
+
)
|
16 |
+
ABSTRACT_RETRIEVER = RAGPretrainedModel.from_index(INDEX_DIR_PATH)
|
17 |
+
# Run once to initialize the retriever
|
18 |
+
ABSTRACT_RETRIEVER.search("LLM")
|
19 |
+
|
20 |
+
|
21 |
+
class PaperList:
|
22 |
+
COLUMN_INFO = [
|
23 |
+
["Title", "str"],
|
24 |
+
["Authors", "str"],
|
25 |
+
["Type", "str"],
|
26 |
+
["Paper page", "markdown"],
|
27 |
+
["OpenReview", "markdown"],
|
28 |
+
["GitHub", "markdown"],
|
29 |
+
["Spaces", "markdown"],
|
30 |
+
["Models", "markdown"],
|
31 |
+
["Datasets", "markdown"],
|
32 |
+
["claimed", "markdown"],
|
33 |
+
]
|
34 |
+
|
35 |
+
def __init__(self):
|
36 |
+
self.df_raw = self.get_df()
|
37 |
+
self.df_prettified = self.prettify(self.df_raw)
|
38 |
+
|
39 |
+
@staticmethod
|
40 |
+
def get_df() -> pd.DataFrame:
|
41 |
+
df = pd.merge(
|
42 |
+
left=datasets.load_dataset("ICLR2024/ICLR2024-papers", split="train").to_pandas(),
|
43 |
+
right=datasets.load_dataset("ICLR2024/ICLR2024-num-claimed-papers", split="train").to_pandas(),
|
44 |
+
on="id",
|
45 |
+
how="left",
|
46 |
+
)
|
47 |
+
df[["n_authors", "n_linked_authors"]] = df[["n_authors", "n_linked_authors"]].fillna(-1).astype(int)
|
48 |
+
df["paper_page"] = df["arxiv_id"].apply(
|
49 |
+
lambda arxiv_id: f"https://huggingface.co/papers/{arxiv_id}" if arxiv_id else ""
|
50 |
+
)
|
51 |
+
return df
|
52 |
+
|
53 |
+
@staticmethod
|
54 |
+
def create_link(text: str, url: str) -> str:
|
55 |
+
return f'<a href="{url}" target="_blank">{text}</a>'
|
56 |
+
|
57 |
+
@staticmethod
|
58 |
+
def prettify(df: pd.DataFrame) -> pd.DataFrame:
|
59 |
+
rows = []
|
60 |
+
for _, row in df.iterrows():
|
61 |
+
author_linked = "✅" if row.n_linked_authors > 0 else ""
|
62 |
+
n_linked_authors = "" if row.n_linked_authors == -1 else row.n_linked_authors
|
63 |
+
n_authors = "" if row.n_authors == -1 else row.n_authors
|
64 |
+
claimed_paper = "" if n_linked_authors == "" else f"{n_linked_authors}/{n_authors} {author_linked}"
|
65 |
+
|
66 |
+
new_row = {
|
67 |
+
"Title": row["title"],
|
68 |
+
"Authors": ", ".join(row["authors"]),
|
69 |
+
"Type": row["type"],
|
70 |
+
"Paper page": PaperList.create_link(row["arxiv_id"], row["paper_page"]),
|
71 |
+
"OpenReview": PaperList.create_link("OpenReview", row["OpenReview"]),
|
72 |
+
"GitHub": "\n".join([PaperList.create_link("GitHub", url) for url in row["GitHub"]]),
|
73 |
+
"Spaces": "\n".join([PaperList.create_link("Space", url) for url in row["Space"]]),
|
74 |
+
"Models": "\n".join([PaperList.create_link("Model", url) for url in row["Model"]]),
|
75 |
+
"Datasets": "\n".join([PaperList.create_link("Dataset", url) for url in row["Dataset"]]),
|
76 |
+
"claimed": claimed_paper,
|
77 |
+
}
|
78 |
+
rows.append(new_row)
|
79 |
+
return pd.DataFrame(rows, columns=PaperList.get_column_names())
|
80 |
+
|
81 |
+
@staticmethod
|
82 |
+
def get_column_names():
|
83 |
+
return list(map(operator.itemgetter(0), PaperList.COLUMN_INFO))
|
84 |
+
|
85 |
+
def get_column_datatypes(self, column_names: list[str]) -> list[str]:
|
86 |
+
mapping = dict(self.COLUMN_INFO)
|
87 |
+
return [mapping[name] for name in column_names]
|
88 |
+
|
89 |
+
def search(
|
90 |
+
self,
|
91 |
+
title_search_query: str,
|
92 |
+
abstract_search_query: str,
|
93 |
+
max_num_to_retrieve: int,
|
94 |
+
filter_names: list[str],
|
95 |
+
presentation_type: str,
|
96 |
+
columns_names: list[str],
|
97 |
+
) -> pd.DataFrame:
|
98 |
+
df = self.df_raw.copy()
|
99 |
+
# As ragatouille uses str for document_id
|
100 |
+
df["id"] = df["id"].astype(str)
|
101 |
+
|
102 |
+
# Filter by title
|
103 |
+
df = df[df["title"].str.contains(title_search_query, case=False)]
|
104 |
+
|
105 |
+
# Filter by presentation type
|
106 |
+
if presentation_type != "(ALL)":
|
107 |
+
df = df[df["type"] == presentation_type]
|
108 |
+
|
109 |
+
if "Paper page" in filter_names:
|
110 |
+
df = df[df["paper_page"].notnull()]
|
111 |
+
if "GitHub" in filter_names:
|
112 |
+
df = df[df["GitHub"].apply(len) > 0]
|
113 |
+
if "Space" in filter_names:
|
114 |
+
df = df[df["Space"].apply(len) > 0]
|
115 |
+
if "Model" in filter_names:
|
116 |
+
df = df[df["Model"].apply(len) > 0]
|
117 |
+
if "Dataset" in filter_names:
|
118 |
+
df = df[df["Dataset"].apply(len) > 0]
|
119 |
+
|
120 |
+
# Filter by abstract
|
121 |
+
if abstract_search_query:
|
122 |
+
results = ABSTRACT_RETRIEVER.search(abstract_search_query, k=max_num_to_retrieve)
|
123 |
+
remaining_ids = set(map(str, df["id"]))
|
124 |
+
found_id_set = set()
|
125 |
+
found_ids = []
|
126 |
+
for x in results:
|
127 |
+
paper_id = x["document_id"]
|
128 |
+
if paper_id not in remaining_ids:
|
129 |
+
continue
|
130 |
+
if paper_id in found_id_set:
|
131 |
+
continue
|
132 |
+
found_id_set.add(paper_id)
|
133 |
+
found_ids.append(paper_id)
|
134 |
+
df = df[df["id"].isin(found_ids)].set_index("id").reindex(index=found_ids).reset_index()
|
135 |
+
|
136 |
+
df_prettified = self.prettify(df)
|
137 |
+
return df_prettified.loc[:, columns_names]
|
requirements.txt
CHANGED
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
datasets==2.18.0
|
2 |
+
#gradio==4.24.0
|
3 |
+
huggingface_hub==0.22.2
|
4 |
+
pandas==2.2.1
|
5 |
+
ragatouille==0.0.8.post2
|
6 |
+
tqdm==4.66.2
|
style.css
CHANGED
@@ -3,9 +3,19 @@ h1 {
|
|
3 |
display: block;
|
4 |
}
|
5 |
|
6 |
-
|
7 |
-
|
8 |
-
|
9 |
-
background:
|
10 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
11 |
}
|
|
|
3 |
display: block;
|
4 |
}
|
5 |
|
6 |
+
body a,
|
7 |
+
.contain a,
|
8 |
+
#table a {
|
9 |
+
background-color: transparent;
|
10 |
+
color: #58a6ff;
|
11 |
+
text-decoration: none;
|
12 |
+
}
|
13 |
+
|
14 |
+
body a:active,
|
15 |
+
body a:hover {
|
16 |
+
outline-width: 0;
|
17 |
+
}
|
18 |
+
|
19 |
+
body a:hover {
|
20 |
+
text-decoration: underline;
|
21 |
}
|