Hack90 commited on
Commit
712c9f0
·
verified ·
1 Parent(s): 19a59f0

Update app.py

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Files changed (1) hide show
  1. app.py +3 -2
app.py CHANGED
@@ -14,8 +14,6 @@ import numpy as np
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  import matplotlib.pyplot as plt
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  import matplotlib.style as mplstyle
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  from pathlib import Path
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- # using a faster style for plotting
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- mplstyle.use('fast')
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  # Mapping of nucleotides to float coordinates
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  mapping_easy = {
@@ -857,12 +855,15 @@ with ui.navset_card_tab(id="tab"):
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  ############################################################# Plotting ########################################################
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  here = Path(__file__).parent
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  @render.plot
 
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  def plot():
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  #ds = load_dataset('Hack90/virus_tiny')
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  df = pd.read_parquet('virus_ds.parquet')
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  df = df[df['Organism_Name'].isin(input.virus_selector())]
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  # group by virus
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  grouped = df.groupby('Organism_Name')['Sequence'].apply(list)
 
 
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  # plot the comparison
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  fig = None
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  if input.plot_type() == "2D Line":
 
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  import matplotlib.pyplot as plt
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  import matplotlib.style as mplstyle
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  from pathlib import Path
 
 
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  # Mapping of nucleotides to float coordinates
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  mapping_easy = {
 
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  ############################################################# Plotting ########################################################
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  here = Path(__file__).parent
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  @render.plot
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+ import matplotlib as mpl
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  def plot():
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  #ds = load_dataset('Hack90/virus_tiny')
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  df = pd.read_parquet('virus_ds.parquet')
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  df = df[df['Organism_Name'].isin(input.virus_selector())]
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  # group by virus
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  grouped = df.groupby('Organism_Name')['Sequence'].apply(list)
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+ mpl.rcParams.update(mpl.rcParamsDefault)
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+
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  # plot the comparison
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  fig = None
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  if input.plot_type() == "2D Line":