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from shiny import render | |
from shiny.express import input, ui | |
import plotly.express as px | |
import pandas as pd | |
import matplotlib.pyplot as plt | |
ui.page_opts(fillable=True) | |
ui.panel_title("Kmer Analysis") | |
with ui.layout_columns(): | |
with ui.card(): | |
ui.input_slider("slider", "Slider", 0, 10, 5) | |
def plot(): | |
df = pd.read_csv('kmers.csv') | |
k = input.slider() | |
fig = None | |
if k: | |
df = df[df['k'] == k] | |
fig, ax = plt.subplots() | |
ax.bar(df['kmer'], df['count']) | |
ax.set_title(f"Most common {k}-mers") | |
ax.set_xlabel("K-mer") | |
ax.set_ylabel("Count") | |
ax.set_xticklabels(df['kmer'], rotation=90) | |
return fig | |