mgyigit commited on
Commit
2014ab8
1 Parent(s): 101c8c7

Update src/about.py

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  1. src/about.py +9 -18
src/about.py CHANGED
@@ -111,28 +111,19 @@ benchmark_specific_metrics = {
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  'affinity': ['mse', 'mae', 'corr']
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  }
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- display_labels = [
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- 'BLAST', 'HMMER', 'K-SEP', 'APAAC', 'PFAM', 'AAC', 'PROTVEC',
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- 'GENE2VEC', 'LEARNED-VEC', 'MUT2VEC', 'TCGA-EMBEDDING', 'CPCPROT',
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- 'SEQVEC', 'ProtBERT-BFD', 'TAPE-BERT-PFAM', 'ESM-1b', 'ProtALBERT', 'ProtXLNet', 'UNIREP', 'ProtT5-XL',
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- 'MSA-Transformer'
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- ]
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-
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- group_colors = [
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- 'green', 'green', 'green', 'green', 'green', 'green', 'blue',
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- 'blue', 'blue', 'blue', 'blue', 'blue', 'red', 'red',
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- 'red', 'red', 'red', 'red', 'red', 'red', 'red'
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- ]
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-
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- # Create a color dictionary from the labels and colors
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- color_dict = {method.upper(): color for method, color in zip(display_labels, group_colors)}
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-
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  group_color_dict = {
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  'INTERPRO2GO': 'orange', 'UNIRULE2GO': 'orange', 'ENSEMBL-ORTHOLOGY': 'orange',
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  'K-SEP': 'green', 'BERT-PFAM': 'red', 'UNIREP': 'red', 'T5': 'red',
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  'BERT-BFD': 'red', 'HMMER': 'green', 'SEQVEC': 'red', 'ALBERT': 'red',
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- 'BLAST': 'green', 'PFAM': 'green', 'ESMB1': 'red', 'XLNET': 'red',
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- 'AAC': 'green', 'APAAC': 'green', 'PROTVEC': 'blue', 'MUT2VEC': 'blue',
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  'LEARNED-VEC': 'blue', 'CPC-PROT': 'blue', 'GENE2VEC': 'blue',
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  'TCGA-EMBEDDING': 'blue'
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  }
 
 
 
 
 
 
 
 
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  'affinity': ['mse', 'mae', 'corr']
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  }
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  group_color_dict = {
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  'INTERPRO2GO': 'orange', 'UNIRULE2GO': 'orange', 'ENSEMBL-ORTHOLOGY': 'orange',
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  'K-SEP': 'green', 'BERT-PFAM': 'red', 'UNIREP': 'red', 'T5': 'red',
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  'BERT-BFD': 'red', 'HMMER': 'green', 'SEQVEC': 'red', 'ALBERT': 'red',
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+ 'BLAST': 'green', 'PFAM': 'green', 'ESM1B': 'red', 'XLNET': 'red',
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+ 'APAAC': 'green', 'APAAC': 'green', 'PROTVEC': 'blue', 'MUT2VEC': 'blue',
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  'LEARNED-VEC': 'blue', 'CPC-PROT': 'blue', 'GENE2VEC': 'blue',
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  'TCGA-EMBEDDING': 'blue'
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  }
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+
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+ base_methods = [
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+ 'INTERPRO2GO', 'UNIRULE2GO', 'ENSEMBL-ORTHOLOGY', 'K-SEP', 'BERT-PFAM',
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+ 'UNIREP', 'T5', 'BERT-BFD', 'HMMER', 'SEQVEC', 'ALBERT', 'BLAST', 'PFAM',
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+ 'ESM1B', 'XLNET', 'APAAC', 'PROTVEC', 'MUT2VEC', 'LEARNED-VEC', 'CPC-PROT',
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+ 'GENE2VEC', 'TCGA-EMBEDDING'
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+ ]