fatmacankara commited on
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b415a5a
1 Parent(s): 0236678

Update code/alphafold_featureVector.py

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Files changed (1) hide show
  1. code/alphafold_featureVector.py +6 -5
code/alphafold_featureVector.py CHANGED
@@ -384,17 +384,18 @@ def alphafold(input_set, mode, impute):
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  st.write('HERE1')
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- st.write('unipro', uniprotID)
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  pdb_path = hf_hub_download(repo_id="HuBioDataLab/AlphafoldStructures", filename=f"AF-{name}-F{mod}-model_v4.pdb.gz",repo_type = 'dataset')
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  with gzip.open(pdb_path, mode="rt") as f:
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  file_content = f.read()
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  st.write(file_content)
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  st.write('HERE2')
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- st.write(uniprotID)
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- st.write(mod)
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- st.write(pdbSequence)
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- st.write(mode, type(mode))
 
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  st.write(Path(path_to_output_files / '3D_alignment'))
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  st.write('HERE1')
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+ st.write('uniprot', uniprotID)
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  pdb_path = hf_hub_download(repo_id="HuBioDataLab/AlphafoldStructures", filename=f"AF-{name}-F{mod}-model_v4.pdb.gz",repo_type = 'dataset')
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  with gzip.open(pdb_path, mode="rt") as f:
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  file_content = f.read()
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  st.write(file_content)
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  st.write('HERE2')
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+ st.write('uniprotID',uniprotID)
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+ st.write('model_num', mod)
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+ st.write('pdb_path', pdb_path)
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+ st.write('pdbSequence', pdbSequence)
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+ st.write('mode',mode, type(mode))
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  st.write(Path(path_to_output_files / '3D_alignment'))
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