fatmacankara commited on
Commit
410bff6
1 Parent(s): 63af66a

Update code/add_sequence.py

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Files changed (1) hide show
  1. code/add_sequence.py +2 -2
code/add_sequence.py CHANGED
@@ -4,7 +4,7 @@ from Bio import SeqIO
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  import xml.etree.ElementTree as ET
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  def get_uniprot_seq(protein_id):
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- print('Fetching UniProt Sequences for ID: ', protein_id)
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  baseUrl = "http://www.uniprot.org/uniprot/"
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  currentUrl = baseUrl + protein_id + ".fasta"
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  response = r.post(currentUrl)
@@ -19,7 +19,7 @@ def get_uniprot_seq(protein_id):
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  def get_isoforms(protein_id):
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- print('Fetching UniProt Isoforms for ID: ', protein_id)
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  try:
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  # a dictionary storing the sequence of your isoforms, key: accesion number, value: sequence
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  isoforms = dict()
 
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  import xml.etree.ElementTree as ET
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  def get_uniprot_seq(protein_id):
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+ print('>> Fetching UniProt Sequences for ID: ', protein_id)
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  baseUrl = "http://www.uniprot.org/uniprot/"
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  currentUrl = baseUrl + protein_id + ".fasta"
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  response = r.post(currentUrl)
 
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  def get_isoforms(protein_id):
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+ print('>> Fetching UniProt Isoforms for ID: ', protein_id)
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  try:
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  # a dictionary storing the sequence of your isoforms, key: accesion number, value: sequence
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  isoforms = dict()