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fatmacankara
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410bff6
1
Parent(s):
63af66a
Update code/add_sequence.py
Browse files- code/add_sequence.py +2 -2
code/add_sequence.py
CHANGED
@@ -4,7 +4,7 @@ from Bio import SeqIO
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import xml.etree.ElementTree as ET
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def get_uniprot_seq(protein_id):
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print('Fetching UniProt Sequences for ID: ', protein_id)
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baseUrl = "http://www.uniprot.org/uniprot/"
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currentUrl = baseUrl + protein_id + ".fasta"
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response = r.post(currentUrl)
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@@ -19,7 +19,7 @@ def get_uniprot_seq(protein_id):
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def get_isoforms(protein_id):
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print('Fetching UniProt Isoforms for ID: ', protein_id)
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try:
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# a dictionary storing the sequence of your isoforms, key: accesion number, value: sequence
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isoforms = dict()
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import xml.etree.ElementTree as ET
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def get_uniprot_seq(protein_id):
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print('>> Fetching UniProt Sequences for ID: ', protein_id)
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baseUrl = "http://www.uniprot.org/uniprot/"
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currentUrl = baseUrl + protein_id + ".fasta"
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response = r.post(currentUrl)
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def get_isoforms(protein_id):
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print('>> Fetching UniProt Isoforms for ID: ', protein_id)
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try:
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# a dictionary storing the sequence of your isoforms, key: accesion number, value: sequence
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isoforms = dict()
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