Update code/add_3Dalignment.py

code/add_3Dalignment.py

@@ -215,8 +215,10 @@ def get_coords(annot, alignments, coords, resnums_for_sasa, mode):
 
 
 def get_alignments_3D(identifier, model_num, pdb_path, pdbSequence, source, chain, pdbID, mode, path_3D_alignment,file_format = 'gzip'):
-    pdbSequence = convert_non_standard_amino_acids(pdbSequence)
+    st.write('PDB SEW IN FN')
 
+    pdbSequence = convert_non_standard_amino_acids(pdbSequence)
+    st.write(pdbSequence)
     if mode == 1:
         if source == 'PDB':
             # Step 1: Fetch the PDB file