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from models import BioprocessModel |
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import io |
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from PIL import Image |
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import pandas as pd |
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import numpy as np |
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import matplotlib.pyplot as plt |
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import torch |
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from transformers import AutoTokenizer, AutoModelForCausalLM |
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from sympy import symbols, sympify, lambdify |
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import copy |
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from config import DEVICE, MODEL_PATH, MAX_LENGTH, TEMPERATURE |
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from decorators import spaces |
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device = DEVICE |
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model_path = MODEL_PATH |
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tokenizer = AutoTokenizer.from_pretrained(model_path) |
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model = AutoModelForCausalLM.from_pretrained(model_path) |
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@spaces.GPU(duration=100) |
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def generate_analysis(prompt, max_length=MAX_LENGTH, device=None): |
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try: |
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if device is None: |
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device = torch.device('cpu') |
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if next(model.parameters()).device != device: |
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model.to(device) |
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input_ids = tokenizer.encode(prompt, return_tensors='pt').to(device) |
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max_gen_length = min(max_length + input_ids.size(1), model.config.max_position_embeddings) |
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generated_ids = model.generate( |
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input_ids=input_ids, |
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max_length=max_gen_length, |
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temperature=TEMPERATURE, |
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num_return_sequences=1, |
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no_repeat_ngram_size=2, |
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early_stopping=True |
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) |
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output_text = tokenizer.decode(generated_ids[0], skip_special_tokens=True) |
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analysis = output_text[len(prompt):].strip() |
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return analysis |
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except Exception as e: |
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return f"Ocurrió un error durante el análisis: {e}" |
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@spaces.GPU(duration=100) |
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def parse_bounds(bounds_str, num_params): |
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try: |
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bounds = eval(f"[{bounds_str}]") |
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if len(bounds) != num_params: |
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raise ValueError |
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lower_bounds = [b[0] for b in bounds] |
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upper_bounds = [b[1] for b in bounds] |
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return lower_bounds, upper_bounds |
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except: |
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lower_bounds = [-np.inf] * num_params |
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upper_bounds = [np.inf] * num_params |
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return lower_bounds, upper_bounds |
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@spaces.GPU(duration=100) |
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def process_and_plot( |
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file, |
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biomass_eq1, biomass_eq2, biomass_eq3, |
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biomass_param1, biomass_param2, biomass_param3, |
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biomass_bound1, biomass_bound2, biomass_bound3, |
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substrate_eq1, substrate_eq2, substrate_eq3, |
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substrate_param1, substrate_param2, substrate_param3, |
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substrate_bound1, substrate_bound2, substrate_bound3, |
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product_eq1, product_eq2, product_eq3, |
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product_param1, product_param2, product_param3, |
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product_bound1, product_bound2, product_bound3, |
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legend_position, |
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show_legend, |
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show_params, |
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biomass_eq_count, |
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substrate_eq_count, |
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product_eq_count |
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): |
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df = pd.read_excel(file.name) |
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expected_columns = ['Tiempo', 'Biomasa', 'Sustrato', 'Producto'] |
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for col in expected_columns: |
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if col not in df.columns: |
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raise KeyError(f"La columna esperada '{col}' no se encuentra en el archivo Excel.") |
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time = df['Tiempo'].values |
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biomass_data = df['Biomasa'].values |
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substrate_data = df['Sustrato'].values |
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product_data = df['Producto'].values |
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biomass_eq_count = int(biomass_eq_count) |
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substrate_eq_count = int(substrate_eq_count) |
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product_eq_count = int(product_eq_count) |
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biomass_eqs = [biomass_eq1, biomass_eq2, biomass_eq3][:biomass_eq_count] |
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biomass_params = [biomass_param1, biomass_param2, biomass_param3][:biomass_eq_count] |
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biomass_bounds = [biomass_bound1, biomass_bound2, biomass_bound3][:biomass_eq_count] |
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substrate_eqs = [substrate_eq1, substrate_eq2, substrate_eq3][:substrate_eq_count] |
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substrate_params = [substrate_param1, substrate_param2, substrate_param3][:substrate_eq_count] |
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substrate_bounds = [substrate_bound1, substrate_bound2, substrate_bound3][:substrate_eq_count] |
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product_eqs = [product_eq1, product_eq2, product_eq3][:product_eq_count] |
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product_params = [product_param1, product_param2, product_param3][:product_eq_count] |
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product_bounds = [product_bound1, product_bound2, product_bound3][:product_eq_count] |
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biomass_results = [] |
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substrate_results = [] |
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product_results = [] |
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for i in range(len(biomass_eqs)): |
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equation = biomass_eqs[i] |
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params_str = biomass_params[i] |
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bounds_str = biomass_bounds[i] |
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model = BioprocessModel() |
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model.set_model('biomass', equation, params_str) |
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params = [param.strip() for param in params_str.split(',')] |
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lower_bounds, upper_bounds = parse_bounds(bounds_str, len(params)) |
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y_pred = model.fit_model( |
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'biomass', time, biomass_data, |
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bounds=(lower_bounds, upper_bounds) |
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) |
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biomass_results.append({ |
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'model': copy.deepcopy(model), |
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'y_pred': y_pred, |
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'equation': equation |
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}) |
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biomass_model = biomass_results[0]['model'] |
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X_t_func = biomass_model.models['biomass']['function'] |
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biomass_params_values = list(biomass_model.params['biomass'].values()) |
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for i in range(len(substrate_eqs)): |
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equation = substrate_eqs[i] |
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params_str = substrate_params[i] |
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bounds_str = substrate_bounds[i] |
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model = BioprocessModel() |
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t_symbol = symbols('t') |
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expr_substrate = sympify(equation) |
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substrate_params_symbols = symbols([param.strip() for param in params_str.split(',')]) |
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substrate_func_expr = expr_substrate.subs('X(t)', X_t_func(t_symbol, *biomass_params_values)) |
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substrate_func = lambdify( |
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(t_symbol, *substrate_params_symbols), |
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substrate_func_expr, |
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'numpy' |
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) |
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model.models['substrate'] = { |
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'function': substrate_func, |
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'params': [param.strip() for param in params_str.split(',')] |
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} |
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params = model.models['substrate']['params'] |
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lower_bounds, upper_bounds = parse_bounds(bounds_str, len(params)) |
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y_pred = model.fit_model( |
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'substrate', time, substrate_data, |
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bounds=(lower_bounds, upper_bounds) |
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) |
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substrate_results.append({ |
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'model': copy.deepcopy(model), |
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'y_pred': y_pred, |
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'equation': equation |
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}) |
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for i in range(len(product_eqs)): |
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equation = product_eqs[i] |
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params_str = product_params[i] |
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bounds_str = product_bounds[i] |
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model = BioprocessModel() |
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t_symbol = symbols('t') |
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expr_product = sympify(equation) |
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product_params_symbols = symbols([param.strip() for param in params_str.split(',')]) |
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product_func_expr = expr_product.subs('X(t)', X_t_func(t_symbol, *biomass_params_values)) |
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product_func = lambdify( |
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(t_symbol, *product_params_symbols), |
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product_func_expr, |
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'numpy' |
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) |
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model.models['product'] = { |
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'function': product_func, |
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'params': [param.strip() for param in params_str.split(',')] |
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} |
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params = model.models['product']['params'] |
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lower_bounds, upper_bounds = parse_bounds(bounds_str, len(params)) |
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y_pred = model.fit_model( |
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'product', time, product_data, |
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bounds=(lower_bounds, upper_bounds) |
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) |
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product_results.append({ |
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'model': copy.deepcopy(model), |
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'y_pred': y_pred, |
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'equation': equation |
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}) |
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fig, axs = plt.subplots(3, 1, figsize=(10, 15)) |
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axs[0].plot(time, biomass_data, 'o', label='Datos de Biomasa') |
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for i, result in enumerate(biomass_results): |
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axs[0].plot(time, result['y_pred'], '-', label=f'Modelo de Biomasa {i+1}') |
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axs[0].set_xlabel('Tiempo') |
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axs[0].set_ylabel('Biomasa') |
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if show_legend: |
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axs[0].legend(loc=legend_position) |
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axs[1].plot(time, substrate_data, 'o', label='Datos de Sustrato') |
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for i, result in enumerate(substrate_results): |
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axs[1].plot(time, result['y_pred'], '-', label=f'Modelo de Sustrato {i+1}') |
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axs[1].set_xlabel('Tiempo') |
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axs[1].set_ylabel('Sustrato') |
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if show_legend: |
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axs[1].legend(loc=legend_position) |
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axs[2].plot(time, product_data, 'o', label='Datos de Producto') |
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for i, result in enumerate(product_results): |
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axs[2].plot(time, result['y_pred'], '-', label=f'Modelo de Producto {i+1}') |
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axs[2].set_xlabel('Tiempo') |
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axs[2].set_ylabel('Producto') |
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if show_legend: |
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axs[2].legend(loc=legend_position) |
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plt.tight_layout() |
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buf = io.BytesIO() |
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plt.savefig(buf, format='png') |
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buf.seek(0) |
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image = Image.open(buf) |
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all_results = { |
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'biomass_models': [], |
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'substrate_models': [], |
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'product_models': [] |
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} |
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for i, result in enumerate(biomass_results): |
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model_info = { |
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'model_number': i + 1, |
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'equation': result['equation'], |
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'parameters': result['model'].params['biomass'], |
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'R2': result['model'].r2['biomass'], |
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'RMSE': result['model'].rmse['biomass'] |
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} |
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all_results['biomass_models'].append(model_info) |
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for i, result in enumerate(substrate_results): |
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model_info = { |
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'model_number': i + 1, |
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'equation': result['equation'], |
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'parameters': result['model'].params['substrate'], |
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'R2': result['model'].r2['substrate'], |
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'RMSE': result['model'].rmse['substrate'] |
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} |
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all_results['substrate_models'].append(model_info) |
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for i, result in enumerate(product_results): |
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model_info = { |
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'model_number': i + 1, |
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'equation': result['equation'], |
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'parameters': result['model'].params['product'], |
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'R2': result['model'].r2['product'], |
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'RMSE': result['model'].rmse['product'] |
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} |
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all_results['product_models'].append(model_info) |
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results_text = "Resultados Experimentales:\n\n" |
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results_text += "Modelos de Biomasa:\n" |
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for model_info in all_results['biomass_models']: |
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results_text += f""" |
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Modelo {model_info['model_number']}: |
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Ecuación: {model_info['equation']} |
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Parámetros: {model_info['parameters']} |
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R²: {model_info['R2']:.4f} |
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RMSE: {model_info['RMSE']:.4f} |
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""" |
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results_text += "\nModelos de Sustrato:\n" |
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for model_info in all_results['substrate_models']: |
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results_text += f""" |
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Modelo {model_info['model_number']}: |
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Ecuación: {model_info['equation']} |
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Parámetros: {model_info['parameters']} |
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R²: {model_info['R2']:.4f} |
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RMSE: {model_info['RMSE']:.4f} |
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""" |
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results_text += "\nModelos de Producto:\n" |
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for model_info in all_results['product_models']: |
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results_text += f""" |
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Modelo {model_info['model_number']}: |
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Ecuación: {model_info['equation']} |
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Parámetros: {model_info['parameters']} |
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R²: {model_info['R2']:.4f} |
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RMSE: {model_info['RMSE']:.4f} |
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""" |
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prompt = f""" |
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Eres un experto en modelado de bioprocesos. |
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Analiza los siguientes resultados experimentales y proporciona un veredicto sobre la calidad de los modelos, sugiriendo mejoras si es necesario. |
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{results_text} |
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Tu análisis debe ser detallado y profesional. |
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""" |
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analysis = generate_analysis(prompt) |
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return [image], analysis |
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