|
|
|
|
|
from models import BioprocessModel |
|
import io |
|
from PIL import Image |
|
import pandas as pd |
|
import numpy as np |
|
import matplotlib.pyplot as plt |
|
import torch |
|
from transformers import AutoTokenizer, AutoModelForCausalLM |
|
from sympy import symbols, sympify, lambdify |
|
import copy |
|
from config import DEVICE, MODEL_PATH, MAX_LENGTH, TEMPERATURE |
|
from decorators import spaces |
|
|
|
|
|
device = DEVICE |
|
|
|
|
|
model_path = MODEL_PATH |
|
tokenizer = AutoTokenizer.from_pretrained(model_path) |
|
model = AutoModelForCausalLM.from_pretrained(model_path) |
|
|
|
|
|
from decorators import spaces |
|
|
|
@spaces.GPU(duration=100) |
|
def generate_analysis(prompt, max_length=1024, device=None): |
|
try: |
|
if device is None: |
|
device = torch.device('cpu') |
|
|
|
|
|
if next(model.parameters()).device != device: |
|
model.to(device) |
|
|
|
|
|
input_ids = tokenizer.encode(prompt, return_tensors='pt').to(device) |
|
max_gen_length = min(max_length + input_ids.size(1), model.config.max_position_embeddings) |
|
|
|
|
|
generated_ids = model.generate( |
|
input_ids=input_ids, |
|
max_length=max_gen_length, |
|
temperature=0.7, |
|
num_return_sequences=1, |
|
no_repeat_ngram_size=2, |
|
early_stopping=True |
|
) |
|
|
|
output_text = tokenizer.decode(generated_ids[0], skip_special_tokens=True) |
|
analysis = output_text[len(prompt):].strip() |
|
return analysis |
|
except RuntimeError as e: |
|
return f"Error durante la ejecución: {str(e)}" |
|
except Exception as e: |
|
return f"Ocurrió un error durante el análisis: {e}" |
|
|
|
@spaces.GPU(duration=100) |
|
def parse_bounds(bounds_str, num_params): |
|
try: |
|
bounds = eval(f"[{bounds_str}]") |
|
if len(bounds) != num_params: |
|
raise ValueError |
|
lower_bounds = [b[0] for b in bounds] |
|
upper_bounds = [b[1] for b in bounds] |
|
return lower_bounds, upper_bounds |
|
except: |
|
lower_bounds = [-np.inf] * num_params |
|
upper_bounds = [np.inf] * num_params |
|
return lower_bounds, upper_bounds |
|
|
|
@spaces.GPU(duration=100) |
|
def process_and_plot( |
|
file, |
|
biomass_eq1, biomass_eq2, biomass_eq3, |
|
biomass_param1, biomass_param2, biomass_param3, |
|
biomass_bound1, biomass_bound2, biomass_bound3, |
|
substrate_eq1, substrate_eq2, substrate_eq3, |
|
substrate_param1, substrate_param2, substrate_param3, |
|
substrate_bound1, substrate_bound2, substrate_bound3, |
|
product_eq1, product_eq2, product_eq3, |
|
product_param1, product_param2, product_param3, |
|
product_bound1, product_bound2, product_bound3, |
|
legend_position, |
|
show_legend, |
|
show_params, |
|
biomass_eq_count, |
|
substrate_eq_count, |
|
product_eq_count |
|
): |
|
|
|
df = pd.read_excel(file.name) |
|
expected_columns = ['Tiempo', 'Biomasa', 'Sustrato', 'Producto'] |
|
for col in expected_columns: |
|
if col not in df.columns: |
|
raise KeyError(f"La columna esperada '{col}' no se encuentra en el archivo Excel.") |
|
|
|
|
|
time = df['Tiempo'].values |
|
biomass_data = df['Biomasa'].values |
|
substrate_data = df['Sustrato'].values |
|
product_data = df['Producto'].values |
|
|
|
|
|
biomass_eq_count = int(biomass_eq_count) |
|
substrate_eq_count = int(substrate_eq_count) |
|
product_eq_count = int(product_eq_count) |
|
|
|
|
|
biomass_eqs = [biomass_eq1, biomass_eq2, biomass_eq3][:biomass_eq_count] |
|
biomass_params = [biomass_param1, biomass_param2, biomass_param3][:biomass_eq_count] |
|
biomass_bounds = [biomass_bound1, biomass_bound2, biomass_bound3][:biomass_eq_count] |
|
|
|
substrate_eqs = [substrate_eq1, substrate_eq2, substrate_eq3][:substrate_eq_count] |
|
substrate_params = [substrate_param1, substrate_param2, substrate_param3][:substrate_eq_count] |
|
substrate_bounds = [substrate_bound1, substrate_bound2, substrate_bound3][:substrate_eq_count] |
|
|
|
product_eqs = [product_eq1, product_eq2, product_eq3][:product_eq_count] |
|
product_params = [product_param1, product_param2, product_param3][:product_eq_count] |
|
product_bounds = [product_bound1, product_bound2, product_bound3][:product_eq_count] |
|
|
|
biomass_results = [] |
|
substrate_results = [] |
|
product_results = [] |
|
|
|
|
|
for i in range(len(biomass_eqs)): |
|
equation = biomass_eqs[i] |
|
params_str = biomass_params[i] |
|
bounds_str = biomass_bounds[i] |
|
|
|
model = BioprocessModel() |
|
model.set_model('biomass', equation, params_str) |
|
|
|
params = [param.strip() for param in params_str.split(',')] |
|
lower_bounds, upper_bounds = parse_bounds(bounds_str, len(params)) |
|
|
|
y_pred = model.fit_model( |
|
'biomass', time, biomass_data, |
|
bounds=(lower_bounds, upper_bounds) |
|
) |
|
biomass_results.append({ |
|
'model': copy.deepcopy(model), |
|
'y_pred': y_pred, |
|
'equation': equation |
|
}) |
|
|
|
|
|
biomass_model = biomass_results[0]['model'] |
|
X_t_func = biomass_model.models['biomass']['function'] |
|
biomass_params_values = list(biomass_model.params['biomass'].values()) |
|
|
|
|
|
for i in range(len(substrate_eqs)): |
|
equation = substrate_eqs[i] |
|
params_str = substrate_params[i] |
|
bounds_str = substrate_bounds[i] |
|
|
|
model = BioprocessModel() |
|
|
|
t_symbol = symbols('t') |
|
expr_substrate = sympify(equation) |
|
substrate_params_symbols = symbols([param.strip() for param in params_str.split(',')]) |
|
substrate_func_expr = expr_substrate.subs('X(t)', X_t_func(t_symbol, *biomass_params_values)) |
|
substrate_func = lambdify( |
|
(t_symbol, *substrate_params_symbols), |
|
substrate_func_expr, |
|
'numpy' |
|
) |
|
model.models['substrate'] = { |
|
'function': substrate_func, |
|
'params': [param.strip() for param in params_str.split(',')] |
|
} |
|
|
|
params = model.models['substrate']['params'] |
|
lower_bounds, upper_bounds = parse_bounds(bounds_str, len(params)) |
|
|
|
y_pred = model.fit_model( |
|
'substrate', time, substrate_data, |
|
bounds=(lower_bounds, upper_bounds) |
|
) |
|
substrate_results.append({ |
|
'model': copy.deepcopy(model), |
|
'y_pred': y_pred, |
|
'equation': equation |
|
}) |
|
|
|
|
|
for i in range(len(product_eqs)): |
|
equation = product_eqs[i] |
|
params_str = product_params[i] |
|
bounds_str = product_bounds[i] |
|
|
|
model = BioprocessModel() |
|
|
|
t_symbol = symbols('t') |
|
expr_product = sympify(equation) |
|
product_params_symbols = symbols([param.strip() for param in params_str.split(',')]) |
|
product_func_expr = expr_product.subs('X(t)', X_t_func(t_symbol, *biomass_params_values)) |
|
product_func = lambdify( |
|
(t_symbol, *product_params_symbols), |
|
product_func_expr, |
|
'numpy' |
|
) |
|
model.models['product'] = { |
|
'function': product_func, |
|
'params': [param.strip() for param in params_str.split(',')] |
|
} |
|
|
|
params = model.models['product']['params'] |
|
lower_bounds, upper_bounds = parse_bounds(bounds_str, len(params)) |
|
|
|
y_pred = model.fit_model( |
|
'product', time, product_data, |
|
bounds=(lower_bounds, upper_bounds) |
|
) |
|
product_results.append({ |
|
'model': copy.deepcopy(model), |
|
'y_pred': y_pred, |
|
'equation': equation |
|
}) |
|
|
|
|
|
fig, axs = plt.subplots(3, 1, figsize=(10, 15)) |
|
|
|
|
|
axs[0].plot(time, biomass_data, 'o', label='Datos de Biomasa') |
|
for i, result in enumerate(biomass_results): |
|
axs[0].plot(time, result['y_pred'], '-', label=f'Modelo de Biomasa {i+1}') |
|
axs[0].set_xlabel('Tiempo') |
|
axs[0].set_ylabel('Biomasa') |
|
if show_legend: |
|
axs[0].legend(loc=legend_position) |
|
|
|
|
|
axs[1].plot(time, substrate_data, 'o', label='Datos de Sustrato') |
|
for i, result in enumerate(substrate_results): |
|
axs[1].plot(time, result['y_pred'], '-', label=f'Modelo de Sustrato {i+1}') |
|
axs[1].set_xlabel('Tiempo') |
|
axs[1].set_ylabel('Sustrato') |
|
if show_legend: |
|
axs[1].legend(loc=legend_position) |
|
|
|
|
|
axs[2].plot(time, product_data, 'o', label='Datos de Producto') |
|
for i, result in enumerate(product_results): |
|
axs[2].plot(time, result['y_pred'], '-', label=f'Modelo de Producto {i+1}') |
|
axs[2].set_xlabel('Tiempo') |
|
axs[2].set_ylabel('Producto') |
|
if show_legend: |
|
axs[2].legend(loc=legend_position) |
|
|
|
plt.tight_layout() |
|
buf = io.BytesIO() |
|
plt.savefig(buf, format='png') |
|
buf.seek(0) |
|
image = Image.open(buf) |
|
|
|
all_results = { |
|
'biomass_models': [], |
|
'substrate_models': [], |
|
'product_models': [] |
|
} |
|
|
|
for i, result in enumerate(biomass_results): |
|
model_info = { |
|
'model_number': i + 1, |
|
'equation': result['equation'], |
|
'parameters': result['model'].params['biomass'], |
|
'R2': result['model'].r2['biomass'], |
|
'RMSE': result['model'].rmse['biomass'] |
|
} |
|
all_results['biomass_models'].append(model_info) |
|
|
|
for i, result in enumerate(substrate_results): |
|
model_info = { |
|
'model_number': i + 1, |
|
'equation': result['equation'], |
|
'parameters': result['model'].params['substrate'], |
|
'R2': result['model'].r2['substrate'], |
|
'RMSE': result['model'].rmse['substrate'] |
|
} |
|
all_results['substrate_models'].append(model_info) |
|
|
|
for i, result in enumerate(product_results): |
|
model_info = { |
|
'model_number': i + 1, |
|
'equation': result['equation'], |
|
'parameters': result['model'].params['product'], |
|
'R2': result['model'].r2['product'], |
|
'RMSE': result['model'].rmse['product'] |
|
} |
|
all_results['product_models'].append(model_info) |
|
|
|
results_text = "Resultados Experimentales:\n\n" |
|
|
|
results_text += "Modelos de Biomasa:\n" |
|
for model_info in all_results['biomass_models']: |
|
results_text += f""" |
|
Modelo {model_info['model_number']}: |
|
Ecuación: {model_info['equation']} |
|
Parámetros: {model_info['parameters']} |
|
R²: {model_info['R2']:.4f} |
|
RMSE: {model_info['RMSE']:.4f} |
|
""" |
|
|
|
results_text += "\nModelos de Sustrato:\n" |
|
for model_info in all_results['substrate_models']: |
|
results_text += f""" |
|
Modelo {model_info['model_number']}: |
|
Ecuación: {model_info['equation']} |
|
Parámetros: {model_info['parameters']} |
|
R²: {model_info['R2']:.4f} |
|
RMSE: {model_info['RMSE']:.4f} |
|
""" |
|
|
|
results_text += "\nModelos de Producto:\n" |
|
for model_info in all_results['product_models']: |
|
results_text += f""" |
|
Modelo {model_info['model_number']}: |
|
Ecuación: {model_info['equation']} |
|
Parámetros: {model_info['parameters']} |
|
R²: {model_info['R2']:.4f} |
|
RMSE: {model_info['RMSE']:.4f} |
|
""" |
|
|
|
prompt = f""" |
|
Eres un experto en modelado de bioprocesos. |
|
|
|
Analiza los siguientes resultados experimentales y proporciona un veredicto sobre la calidad de los modelos, sugiriendo mejoras si es necesario. |
|
|
|
{results_text} |
|
|
|
Tu análisis debe ser detallado y profesional. |
|
""" |
|
analysis = generate_analysis(prompt) |
|
|
|
return [image], analysis |
|
|