Atom Bioworks
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Commit
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f571e5b
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Parent(s):
529b593
Create requirements.txt
Browse files- requirements.txt +170 -0
requirements.txt
ADDED
@@ -0,0 +1,170 @@
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1 |
+
absl-py==2.1.0
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2 |
+
accelerate==0.30.0
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3 |
+
aiohttp==3.9.5
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4 |
+
aiosignal==1.3.1
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5 |
+
antlr4-python3-runtime==4.9.3
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6 |
+
asttokens==2.4.1
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7 |
+
astunparse==1.6.3
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8 |
+
async-timeout==4.0.3
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9 |
+
attrs==23.2.0
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10 |
+
beautifulsoup4==4.12.3
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11 |
+
biopython==1.83
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12 |
+
bleach==6.1.0
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13 |
+
boto3==1.34.142
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14 |
+
botocore==1.34.142
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15 |
+
certifi==2024.2.2
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16 |
+
charset-normalizer==3.3.2
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17 |
+
chex==0.1.86
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18 |
+
comm==0.2.2
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19 |
+
contourpy==1.2.1
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20 |
+
cycler==0.12.1
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21 |
+
datasets==2.19.1
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22 |
+
debugpy==1.8.1
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23 |
+
decorator==5.1.1
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24 |
+
defusedxml==0.7.1
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25 |
+
dill==0.3.8
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26 |
+
dm-haiku==0.0.12
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27 |
+
et-xmlfile==1.1.0
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28 |
+
etils==1.5.2
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29 |
+
exceptiongroup==1.2.1
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30 |
+
executing==2.0.1
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31 |
+
fair-esm==2.0.0
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32 |
+
fastjsonschema==2.20.0
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33 |
+
filelock==3.14.0
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34 |
+
flatbuffers==24.3.25
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35 |
+
flax==0.8.5
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36 |
+
fonttools==4.51.0
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37 |
+
frozenlist==1.4.1
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38 |
+
fsspec==2024.3.1
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39 |
+
gast==0.5.4
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40 |
+
gdown==5.1.0
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41 |
+
google-pasta==0.2.0
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42 |
+
grpcio==1.63.0
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43 |
+
h5py==3.11.0
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44 |
+
huggingface-hub==0.23.0
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45 |
+
idna==3.7
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46 |
+
importlib_metadata==7.1.0
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47 |
+
importlib_resources==6.4.0
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48 |
+
ipykernel==6.29.4
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49 |
+
ipython==8.18.1
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50 |
+
jax==0.4.27
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51 |
+
jax-cuda12-pjrt==0.4.27
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52 |
+
jax-cuda12-plugin==0.4.27
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53 |
+
jaxlib==0.4.27
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54 |
+
jedi==0.19.1
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55 |
+
Jinja2==3.1.4
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56 |
+
jmespath==1.0.1
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57 |
+
jmp==0.0.4
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58 |
+
joblib==1.4.2
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59 |
+
jsonschema==4.22.0
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60 |
+
jsonschema-specifications==2023.12.1
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61 |
+
jupyter_client==8.6.1
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62 |
+
jupyter_core==5.7.2
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63 |
+
jupyterlab_pygments==0.3.0
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64 |
+
keras==3.3.3
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65 |
+
kiwisolver==1.4.5
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66 |
+
libclang==18.1.1
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67 |
+
Markdown==3.6
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68 |
+
markdown-it-py==3.0.0
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69 |
+
MarkupSafe==2.1.5
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70 |
+
matplotlib==3.8.4
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71 |
+
matplotlib-inline==0.1.7
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72 |
+
mdurl==0.1.2
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73 |
+
mistune==3.0.2
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74 |
+
ml-dtypes==0.3.2
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75 |
+
mpmath==1.3.0
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76 |
+
msgpack==1.0.8
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77 |
+
multidict==6.0.5
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78 |
+
multiprocess==0.70.16
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79 |
+
namex==0.0.8
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80 |
+
nbclient==0.10.0
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81 |
+
nbconvert==7.16.4
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82 |
+
nbformat==5.10.4
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83 |
+
nest-asyncio==1.6.0
|
84 |
+
networkx==3.2.1
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85 |
+
nucleotide-transformer @ file:///home/abwer/aptLM/nucleotide-transformer
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86 |
+
numpy==1.26.4
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87 |
+
nvidia-cublas-cu12==12.1.3.1
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88 |
+
nvidia-cuda-cupti-cu12==12.1.105
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89 |
+
nvidia-cuda-nvcc-cu12==12.5.82
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90 |
+
nvidia-cuda-nvrtc-cu12==12.1.105
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91 |
+
nvidia-cuda-runtime-cu12==12.1.105
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92 |
+
nvidia-cudnn-cu12==8.9.2.26
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93 |
+
nvidia-cufft-cu12==11.0.2.54
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94 |
+
nvidia-curand-cu12==10.3.2.106
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95 |
+
nvidia-cusolver-cu12==11.4.5.107
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96 |
+
nvidia-cusparse-cu12==12.1.0.106
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97 |
+
nvidia-nccl-cu12==2.20.5
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98 |
+
nvidia-nvjitlink-cu12==12.4.127
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99 |
+
nvidia-nvtx-cu12==12.1.105
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100 |
+
omegaconf==2.3.0
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101 |
+
openpyxl==3.1.5
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102 |
+
opt-einsum==3.3.0
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103 |
+
optax==0.2.3
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104 |
+
optree==0.11.0
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105 |
+
orbax-checkpoint==0.5.20
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106 |
+
packaging==24.0
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107 |
+
pandas==2.2.2
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108 |
+
pandocfilters==1.5.1
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109 |
+
parso==0.8.4
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110 |
+
pexpect==4.9.0
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111 |
+
pillow==10.3.0
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112 |
+
platformdirs==4.2.1
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113 |
+
prompt-toolkit==3.0.43
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114 |
+
protobuf==4.25.3
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115 |
+
psutil==5.9.8
|
116 |
+
ptyprocess==0.7.0
|
117 |
+
pure-eval==0.2.2
|
118 |
+
pyarrow==16.0.0
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119 |
+
pyarrow-hotfix==0.6
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120 |
+
Pygments==2.18.0
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121 |
+
pyparsing==3.1.2
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122 |
+
PySocks==1.7.1
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123 |
+
python-dateutil==2.9.0.post0
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124 |
+
pytz==2024.1
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125 |
+
PyYAML==6.0.1
|
126 |
+
pyzmq==26.0.3
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127 |
+
referencing==0.35.1
|
128 |
+
regex==2024.4.28
|
129 |
+
requests==2.31.0
|
130 |
+
rich==13.7.1
|
131 |
+
rpds-py==0.18.1
|
132 |
+
s3transfer==0.10.2
|
133 |
+
safetensors==0.4.3
|
134 |
+
scikit-learn==1.4.2
|
135 |
+
scipy==1.13.0
|
136 |
+
seaborn==0.13.2
|
137 |
+
six==1.16.0
|
138 |
+
soupsieve==2.5
|
139 |
+
stack-data==0.6.3
|
140 |
+
sympy==1.12
|
141 |
+
tabulate==0.9.0
|
142 |
+
tensorboard==2.16.2
|
143 |
+
tensorboard-data-server==0.7.2
|
144 |
+
tensorflow==2.16.1
|
145 |
+
tensorflow-io-gcs-filesystem==0.37.0
|
146 |
+
tensorstore==0.1.63
|
147 |
+
termcolor==2.4.0
|
148 |
+
threadpoolctl==3.5.0
|
149 |
+
timeout-decorator==0.5.0
|
150 |
+
tinycss2==1.3.0
|
151 |
+
tokenizers==0.19.1
|
152 |
+
toolz==0.12.1
|
153 |
+
torch==2.3.0
|
154 |
+
torchvision==0.18.0
|
155 |
+
tornado==6.4
|
156 |
+
tqdm==4.66.4
|
157 |
+
traitlets==5.14.3
|
158 |
+
transformers==4.40.2
|
159 |
+
triton==2.3.0
|
160 |
+
typing_extensions==4.11.0
|
161 |
+
tzdata==2024.1
|
162 |
+
urllib3==1.26.19
|
163 |
+
wcwidth==0.2.13
|
164 |
+
webencodings==0.5.1
|
165 |
+
Werkzeug==3.0.3
|
166 |
+
wget==3.2
|
167 |
+
wrapt==1.16.0
|
168 |
+
xxhash==3.4.1
|
169 |
+
yarl==1.9.4
|
170 |
+
zipp==3.18.1
|