Atom Bioworks commited on
Commit
b200805
1 Parent(s): d3248a6

Update gui.py

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Files changed (1) hide show
  1. gui.py +3 -17
gui.py CHANGED
@@ -1,35 +1,21 @@
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- from api_prediction import AptaTransPipeline_Dist
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  import gradio as gr
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  import pandas as pd
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  import torch
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  import tempfile
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  from tabulate import tabulate
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- from PIL import Image
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  import itertools
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  import os
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- import RNA
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- import matplotlib.pyplot as plt
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- import matplotlib.image as mpimg
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  import random
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- from scipy.cluster.hierarchy import dendrogram, linkage
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  # Visualization
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- from Bio.Phylo.PhyloXML import Phylogeny
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- from Bio import SeqIO
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- from Bio.Seq import Seq
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- from Bio.SeqRecord import SeqRecord
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- from Bio import AlignIO
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- from Bio.Align.Applications import MafftCommandline
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- from Bio import Phylo
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- from Bio.Phylo.TreeConstruction import DistanceCalculator, DistanceTreeConstructor
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- import io
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  os.environ['GRADIO_SERVER_NAME'] = '0.0.0.0'
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- title='DNAptaESM2 Model Infernence'
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  desc='AptaBLE (cross-attention network), trained to predict the likelihood a DNA aptamer will form a complex with a target protein!\n\nPass in a FASTA-formatted file of all aptamers and input your protein target amino acid sequence. Your output scores are available for download via an Excel file.'
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  global pipeline
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- pipeline = AptaTransPipeline_Dist(
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  lr=1e-6,
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  weight_decay=None,
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  epochs=None,
 
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+ from api_prediction import AptaBLE_Pipeline_Dist
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  import gradio as gr
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  import pandas as pd
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  import torch
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  import tempfile
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  from tabulate import tabulate
 
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  import itertools
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  import os
 
 
 
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  import random
 
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  # Visualization
 
 
 
 
 
 
 
 
 
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  os.environ['GRADIO_SERVER_NAME'] = '0.0.0.0'
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+ title='DNAptaBLE Model Inference'
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  desc='AptaBLE (cross-attention network), trained to predict the likelihood a DNA aptamer will form a complex with a target protein!\n\nPass in a FASTA-formatted file of all aptamers and input your protein target amino acid sequence. Your output scores are available for download via an Excel file.'
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  global pipeline
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+ pipeline = AptaBLE_Pipeline_Dist(
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  lr=1e-6,
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  weight_decay=None,
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  epochs=None,