Arts-of-coding commited on
Commit
6a58342
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1 Parent(s): 88e6a22

Update dash_plotly_QC_scRNA.py

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Files changed (1) hide show
  1. dash_plotly_QC_scRNA.py +9 -9
dash_plotly_QC_scRNA.py CHANGED
@@ -26,14 +26,6 @@ mountpount=os.environ['AZURE_MOUNT_POINT'],
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  AZURE_STORAGE_ACCESS_KEY=os.getenv('AZURE_STORAGE_ACCESS_KEY')
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  AZURE_STORAGE_ACCOUNT=os.getenv('AZURE_STORAGE_ACCOUNT')
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- filepath = 'az://dataliu/Aniridia_SC_liu_unfiltered_umap_raw.parquet'
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-
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- storage_options={'account_name': AZURE_STORAGE_ACCOUNT, 'account_key': AZURE_STORAGE_ACCESS_KEY,'anon': False}
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- #azfs = AzureBlobFileSystem(**storage_options )
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-
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- df = pl.read_parquet(filepath,storage_options=storage_options)
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- #abfs = AzureBlobFileSystem(account_name=accountname,account_key=accountkey)
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-
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  # Load in config file
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  config_path = "./data/config.yaml"
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@@ -44,12 +36,20 @@ def read_config(filename):
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  return config
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  config = read_config(config_path)
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- #path_parquet = config.get("path_parquet")
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  conditions = config.get("conditions")
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  col_features = config.get("col_features")
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  col_counts = config.get("col_counts")
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  col_mt = config.get("col_mt")
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  #df = df.rename({"__index_level_0__": "Unnamed: 0"})
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  # Setup the app
 
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  AZURE_STORAGE_ACCESS_KEY=os.getenv('AZURE_STORAGE_ACCESS_KEY')
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  AZURE_STORAGE_ACCOUNT=os.getenv('AZURE_STORAGE_ACCOUNT')
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  # Load in config file
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  config_path = "./data/config.yaml"
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  return config
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  config = read_config(config_path)
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+ path_parquet = config.get("path_parquet")
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  conditions = config.get("conditions")
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  col_features = config.get("col_features")
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  col_counts = config.get("col_counts")
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  col_mt = config.get("col_mt")
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+ filepath = f('az://{path_parquet}')
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+
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+ storage_options={'account_name': AZURE_STORAGE_ACCOUNT, 'account_key': AZURE_STORAGE_ACCESS_KEY,'anon': False}
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+ #azfs = AzureBlobFileSystem(**storage_options )
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+
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+ df = pl.read_parquet(filepath,storage_options=storage_options)
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+ #abfs = AzureBlobFileSystem(account_name=accountname,account_key=accountkey)
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+
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  #df = df.rename({"__index_level_0__": "Unnamed: 0"})
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  # Setup the app