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| [tool.poetry] | |
| name = "hexviz" | |
| version = "0.1.0" | |
| description = "Visualize and analyze attention patterns for protein language models on structures" | |
| authors = ["Aksel Lenes <aksel.lenes@gmail.com>"] | |
| [tool.poetry.dependencies] | |
| python = "^3.10" | |
| streamlit = "1.17" | |
| stmol = "^0.0.9" | |
| biopython = "^1.81" | |
| transformers = "^4.27.1" | |
| torch = "^2.0.0" | |
| sentencepiece = "^0.1.97" | |
| tape-proteins = "^0.5" | |
| matplotlib = "^3.7.1" | |
| ruff = "^0.0.264" | |
| [tool.poetry.dev-dependencies] | |
| pytest = "^7.2.2" | |
| [build-system] | |
| requires = ["poetry-core>=1.0.0"] | |
| build-backend = "poetry.core.masonry.api" | |
| [tool.ruff] | |
| line-length = 100 | |
| [tool.black] | |
| line-length = 100 |