| { | |
| "version": "1.0", | |
| "truncation": null, | |
| "padding": { | |
| "strategy": "BatchLongest", | |
| "direction": "Right", | |
| "pad_to_multiple_of": null, | |
| "pad_id": 0, | |
| "pad_type_id": 0, | |
| "pad_token": "<pad>" | |
| }, | |
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| { | |
| "id": 0, | |
| "content": "<pad>", | |
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| "special": true | |
| }, | |
| { | |
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| }, | |
| { | |
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| "content": "<s>", | |
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| }, | |
| { | |
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| "content": "</s>", | |
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| }, | |
| { | |
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| "content": "<unk>", | |
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| "special": true | |
| }, | |
| { | |
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| "content": "<cls>", | |
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| "rstrip": false, | |
| "normalized": false, | |
| "special": true | |
| }, | |
| { | |
| "id": 6, | |
| "content": "<sep>", | |
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| "lstrip": false, | |
| "rstrip": false, | |
| "normalized": false, | |
| "special": true | |
| }, | |
| { | |
| "id": 7, | |
| "content": "<expr_top10>", | |
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| "rstrip": false, | |
| "normalized": false, | |
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| }, | |
| { | |
| "id": 8, | |
| "content": "<expr_pre75_90>", | |
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| }, | |
| { | |
| "id": 9, | |
| "content": "<expr_pre50_75>", | |
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| }, | |
| { | |
| "id": 10, | |
| "content": "<expr_pre25_50>", | |
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| "rstrip": false, | |
| "normalized": false, | |
| "special": true | |
| }, | |
| { | |
| "id": 11, | |
| "content": "<expr_low25>", | |
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| }, | |
| { | |
| "id": 12, | |
| "content": "<expr_unk>", | |
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| "special": true | |
| }, | |
| { | |
| "id": 13, | |
| "content": "<seqpos_begin>", | |
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| "rstrip": false, | |
| "normalized": false, | |
| "special": true | |
| }, | |
| { | |
| "id": 14, | |
| "content": "<seqpos_end>", | |
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| "lstrip": false, | |
| "rstrip": false, | |
| "normalized": false, | |
| "special": true | |
| }, | |
| { | |
| "id": 15, | |
| "content": "<seqpos_mid>", | |
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| "rstrip": false, | |
| "normalized": false, | |
| "special": true | |
| }, | |
| { | |
| "id": 16, | |
| "content": "<sim_high>", | |
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| "normalized": false, | |
| "special": true | |
| }, | |
| { | |
| "id": 17, | |
| "content": "<sim_low>", | |
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| "normalized": false, | |
| "special": true | |
| }, | |
| { | |
| "id": 18, | |
| "content": "<S_cerevisiae>", | |
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| "rstrip": false, | |
| "normalized": false, | |
| "special": true | |
| }, | |
| { | |
| "id": 19, | |
| "content": "<S_pombe>", | |
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| "lstrip": false, | |
| "rstrip": false, | |
| "normalized": false, | |
| "special": true | |
| }, | |
| { | |
| "id": 20, | |
| "content": "<E_coli>", | |
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| "lstrip": false, | |
| "rstrip": false, | |
| "normalized": false, | |
| "special": true | |
| }, | |
| { | |
| "id": 21, | |
| "content": "<B_subtilis>", | |
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| "lstrip": false, | |
| "rstrip": false, | |
| "normalized": false, | |
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| }, | |
| { | |
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| }, | |
| { | |
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| }, | |
| { | |
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| "content": "<mask_W>", | |
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| "normalized": false, | |
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| }, | |
| { | |
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| "content": "<mask_D>", | |
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| "normalized": false, | |
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| }, | |
| { | |
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| "normalized": false, | |
| "special": true | |
| }, | |
| { | |
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| "content": "<mask_V>", | |
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| }, | |
| { | |
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| "content": "<mask_H>", | |
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| }, | |
| { | |
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| "content": "<mask_A>", | |
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| }, | |
| { | |
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| }, | |
| { | |
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| "content": "<mask_G>", | |
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| "normalized": false, | |
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| }, | |
| { | |
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| "content": "<mask_Q>", | |
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| "normalized": false, | |
| "special": true | |
| }, | |
| { | |
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| "content": "<mask_F>", | |
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| "normalized": false, | |
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| }, | |
| { | |
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| "content": "<mask_I>", | |
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| }, | |
| { | |
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| "content": "<mask_T>", | |
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| }, | |
| { | |
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| "content": "<mask_C>", | |
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| }, | |
| { | |
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| "content": "<mask_L>", | |
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| }, | |
| { | |
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| "content": "<mask_P>", | |
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| }, | |
| { | |
| "id": 39, | |
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| }, | |
| { | |
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| "content": "<mask_M>", | |
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| "special": true | |
| }, | |
| { | |
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| "content": "<mask_Y>", | |
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| }, | |
| { | |
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| "content": "<mask_R>", | |
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| "normalized": false, | |
| "special": true | |
| }, | |
| { | |
| "id": 43, | |
| "content": "TTT", | |
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| }, | |
| { | |
| "id": 44, | |
| "content": "TTC", | |
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| "special": false | |
| }, | |
| { | |
| "id": 45, | |
| "content": "TTA", | |
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| }, | |
| { | |
| "id": 46, | |
| "content": "TTG", | |
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| }, | |
| { | |
| "id": 47, | |
| "content": "TCT", | |
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| }, | |
| { | |
| "id": 48, | |
| "content": "TCC", | |
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| }, | |
| { | |
| "id": 49, | |
| "content": "TCA", | |
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| }, | |
| { | |
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| "content": "TCG", | |
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| }, | |
| { | |
| "id": 51, | |
| "content": "TAT", | |
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| }, | |
| { | |
| "id": 52, | |
| "content": "TAC", | |
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| "special": false | |
| }, | |
| { | |
| "id": 53, | |
| "content": "TAA", | |
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| }, | |
| { | |
| "id": 54, | |
| "content": "TAG", | |
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| "special": false | |
| }, | |
| { | |
| "id": 55, | |
| "content": "TGT", | |
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| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 56, | |
| "content": "TGC", | |
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| "rstrip": false, | |
| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 57, | |
| "content": "TGA", | |
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| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 58, | |
| "content": "TGG", | |
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| "rstrip": false, | |
| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 59, | |
| "content": "CTT", | |
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| "lstrip": false, | |
| "rstrip": false, | |
| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 60, | |
| "content": "CTC", | |
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| "lstrip": false, | |
| "rstrip": false, | |
| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 61, | |
| "content": "CTA", | |
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| "rstrip": false, | |
| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 62, | |
| "content": "CTG", | |
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| "rstrip": false, | |
| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 63, | |
| "content": "CCT", | |
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| "rstrip": false, | |
| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 64, | |
| "content": "CCC", | |
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| "rstrip": false, | |
| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 65, | |
| "content": "CCA", | |
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| "rstrip": false, | |
| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 66, | |
| "content": "CCG", | |
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| "rstrip": false, | |
| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 67, | |
| "content": "CAT", | |
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| "rstrip": false, | |
| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 68, | |
| "content": "CAC", | |
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| "lstrip": false, | |
| "rstrip": false, | |
| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 69, | |
| "content": "CAA", | |
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| "rstrip": false, | |
| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 70, | |
| "content": "CAG", | |
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| "lstrip": false, | |
| "rstrip": false, | |
| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 71, | |
| "content": "CGT", | |
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| "lstrip": false, | |
| "rstrip": false, | |
| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 72, | |
| "content": "CGC", | |
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| "rstrip": false, | |
| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 73, | |
| "content": "CGA", | |
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| "rstrip": false, | |
| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 74, | |
| "content": "CGG", | |
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| "rstrip": false, | |
| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 75, | |
| "content": "ATT", | |
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| "rstrip": false, | |
| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 76, | |
| "content": "ATC", | |
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| "rstrip": false, | |
| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 77, | |
| "content": "ATA", | |
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| "lstrip": false, | |
| "rstrip": false, | |
| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 78, | |
| "content": "ATG", | |
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| "lstrip": false, | |
| "rstrip": false, | |
| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 79, | |
| "content": "ACT", | |
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| "lstrip": false, | |
| "rstrip": false, | |
| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 80, | |
| "content": "ACC", | |
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| "lstrip": false, | |
| "rstrip": false, | |
| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 81, | |
| "content": "ACA", | |
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| "lstrip": false, | |
| "rstrip": false, | |
| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 82, | |
| "content": "ACG", | |
| "single_word": false, | |
| "lstrip": false, | |
| "rstrip": false, | |
| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 83, | |
| "content": "AAT", | |
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| "lstrip": false, | |
| "rstrip": false, | |
| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 84, | |
| "content": "AAC", | |
| "single_word": false, | |
| "lstrip": false, | |
| "rstrip": false, | |
| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 85, | |
| "content": "AAA", | |
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| "rstrip": false, | |
| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 86, | |
| "content": "AAG", | |
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| "rstrip": false, | |
| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 87, | |
| "content": "AGT", | |
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| "lstrip": false, | |
| "rstrip": false, | |
| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 88, | |
| "content": "AGC", | |
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| "lstrip": false, | |
| "rstrip": false, | |
| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 89, | |
| "content": "AGA", | |
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| "rstrip": false, | |
| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 90, | |
| "content": "AGG", | |
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| "lstrip": false, | |
| "rstrip": false, | |
| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 91, | |
| "content": "GTT", | |
| "single_word": false, | |
| "lstrip": false, | |
| "rstrip": false, | |
| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 92, | |
| "content": "GTC", | |
| "single_word": false, | |
| "lstrip": false, | |
| "rstrip": false, | |
| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 93, | |
| "content": "GTA", | |
| "single_word": false, | |
| "lstrip": false, | |
| "rstrip": false, | |
| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 94, | |
| "content": "GTG", | |
| "single_word": false, | |
| "lstrip": false, | |
| "rstrip": false, | |
| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 95, | |
| "content": "GCT", | |
| "single_word": false, | |
| "lstrip": false, | |
| "rstrip": false, | |
| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 96, | |
| "content": "GCC", | |
| "single_word": false, | |
| "lstrip": false, | |
| "rstrip": false, | |
| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 97, | |
| "content": "GCA", | |
| "single_word": false, | |
| "lstrip": false, | |
| "rstrip": false, | |
| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 98, | |
| "content": "GCG", | |
| "single_word": false, | |
| "lstrip": false, | |
| "rstrip": false, | |
| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 99, | |
| "content": "GAT", | |
| "single_word": false, | |
| "lstrip": false, | |
| "rstrip": false, | |
| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 100, | |
| "content": "GAC", | |
| "single_word": false, | |
| "lstrip": false, | |
| "rstrip": false, | |
| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 101, | |
| "content": "GAA", | |
| "single_word": false, | |
| "lstrip": false, | |
| "rstrip": false, | |
| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 102, | |
| "content": "GAG", | |
| "single_word": false, | |
| "lstrip": false, | |
| "rstrip": false, | |
| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 103, | |
| "content": "GGT", | |
| "single_word": false, | |
| "lstrip": false, | |
| "rstrip": false, | |
| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 104, | |
| "content": "GGC", | |
| "single_word": false, | |
| "lstrip": false, | |
| "rstrip": false, | |
| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 105, | |
| "content": "GGA", | |
| "single_word": false, | |
| "lstrip": false, | |
| "rstrip": false, | |
| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 106, | |
| "content": "GGG", | |
| "single_word": false, | |
| "lstrip": false, | |
| "rstrip": false, | |
| "normalized": true, | |
| "special": false | |
| }, | |
| { | |
| "id": 107, | |
| "content": "<msk>", | |
| "single_word": false, | |
| "lstrip": false, | |
| "rstrip": false, | |
| "normalized": false, | |
| "special": true | |
| } | |
| ], | |
| "normalizer": null, | |
| "pre_tokenizer": { | |
| "type": "Whitespace" | |
| }, | |
| "post_processor": { | |
| "type": "TemplateProcessing", | |
| "single": [ | |
| { | |
| "SpecialToken": { | |
| "id": "<cls>", | |
| "type_id": 0 | |
| } | |
| }, | |
| { | |
| "Sequence": { | |
| "id": "A", | |
| "type_id": 0 | |
| } | |
| }, | |
| { | |
| "SpecialToken": { | |
| "id": "<sep>", | |
| "type_id": 0 | |
| } | |
| } | |
| ], | |
| "pair": [ | |
| { | |
| "Sequence": { | |
| "id": "A", | |
| "type_id": 0 | |
| } | |
| }, | |
| { | |
| "Sequence": { | |
| "id": "B", | |
| "type_id": 0 | |
| } | |
| } | |
| ], | |
| "special_tokens": { | |
| "<cls>": { | |
| "id": "<cls>", | |
| "ids": [ | |
| 5 | |
| ], | |
| "tokens": [ | |
| "<cls>" | |
| ] | |
| }, | |
| "<sep>": { | |
| "id": "<sep>", | |
| "ids": [ | |
| 6 | |
| ], | |
| "tokens": [ | |
| "<sep>" | |
| ] | |
| } | |
| } | |
| }, | |
| "decoder": null, | |
| "model": { | |
| "type": "WordLevel", | |
| "vocab": {}, | |
| "unk_token": "<unk>" | |
| } | |
| } |