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scvi-tools
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tabula-sapiens-small_intestine-scanvi

TensorBoard
scvi-tools
biology
genomics
single-cell
model_cls_name:SCANVI
scvi_version:1.2.0
anndata_version:0.11.1
modality:rna
tissue:various
annotated:True
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+ "cell_wise_cv": "| Metric | Training Value | Validation Value |\n|-------------------------|----------------|------------------|\n| Mean Absolute Error | 1.86 | 2.00 |\n| Pearson Correlation | 0.81 | 0.79 |\n| Spearman Correlation | 0.66 | 0.61 |\n| R\u00b2 (R-Squared) | 0.51 | 0.36 |",
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+ "gene_wise_cv": "| Metric | Training Value |\n|-------------------------|----------------|\n| Mean Absolute Error | 3.63 |\n| Pearson Correlation | 0.86 |\n| Spearman Correlation | 0.96 |\n| R\u00b2 (R-Squared) | 0.60 |",
4
+ "diff_exp": "| Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |\n| --- | --- | --- | --- | --- | --- | --- | --- |\n| CD4-positive, alpha-beta T cell | 0.90 | 1.79 | 0.61 | 0.87 | 0.14 | 0.83 | 5257.00 |\n| CD8-positive, alpha-beta T cell | 0.92 | 2.57 | 0.63 | 0.81 | 0.18 | 0.74 | 2231.00 |\n| enterocyte of epithelium of small intestine | 0.94 | 2.44 | 0.68 | 0.91 | 0.41 | 0.88 | 1100.00 |\n| B cell | 0.92 | 3.49 | 0.69 | 0.75 | 0.29 | 0.76 | 441.00 |\n| plasma cell | 0.87 | 3.50 | 0.67 | 0.77 | 0.23 | 0.86 | 303.00 |\n| small intestine goblet cell | 0.88 | 3.21 | 0.69 | 0.82 | 0.44 | 0.84 | 300.00 |\n| paneth cell of epithelium of small intestine | 0.90 | 3.67 | 0.69 | 0.78 | 0.45 | 0.85 | 177.00 |\n| intestinal tuft cell | 0.91 | 4.03 | 0.67 | 0.69 | 0.39 | 0.79 | 146.00 |\n| transit amplifying cell of small intestine | 0.84 | 3.96 | 0.66 | 0.75 | 0.42 | 0.82 | 127.00 |\n| fibroblast | 0.74 | 3.36 | 0.74 | 0.87 | 0.57 | 0.90 | 88.00 |\n| intestinal crypt stem cell of small intestine | 0.74 | 3.78 | 0.70 | 0.81 | 0.53 | 0.88 | 71.00 |\n| mast cell | 0.88 | 4.01 | 0.66 | 0.64 | 0.31 | 0.79 | 65.00 |\n| neutrophil | 0.75 | 3.82 | 0.72 | 0.73 | 0.42 | 0.81 | 64.00 |\n| monocyte | 0.75 | 3.92 | 0.73 | 0.78 | 0.47 | 0.86 | 61.00 |\n| gut endothelial cell | 0.61 | 5.30 | 0.63 | 0.65 | 0.40 | 0.79 | 15.00 |\n| intestinal enteroendocrine cell | 0.56 | 5.05 | 0.63 | 0.60 | 0.34 | 0.69 | 12.00 |"
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