Hugging Face's logo

scvi-tools
/
tabula-sapiens-small_intestine-scanvi

TensorBoard
scvi-tools
biology
genomics
single-cell
model_cls_name:SCANVI
scvi_version:1.2.0
anndata_version:0.11.1
modality:rna
tissue:various
annotated:True
Model card Files Metrics Community
canergen commited on
Commit
227e670
•
1 Parent(s): d076404

Upload README.md with huggingface_hub

Browse files
Files changed (1) hide show
  1. README.md +21 -21
README.md CHANGED
@@ -55,9 +55,9 @@ space might still be useful for analysis.
55
  | Metric | Training Value | Validation Value |
56
  |-------------------------|----------------|------------------|
57
  | Mean Absolute Error | 1.86 | 2.00 |
58
- | Pearson Correlation | 0.81 | 0.79 |
59
- | Spearman Correlation | 0.66 | 0.61 |
60
- | R² (R-Squared) | 0.51 | 0.36 |
61
 
62
  The gene-wise coefficient of variation summarizes how well variation between different genes is
63
  preserved by the generated model expression. This value is usually quite high.
@@ -66,8 +66,8 @@ preserved by the generated model expression. This value is usually quite high.
66
 
67
  | Metric | Training Value |
68
  |-------------------------|----------------|
69
- | Mean Absolute Error | 3.63 |
70
- | Pearson Correlation | 0.86 |
71
  | Spearman Correlation | 0.96 |
72
  | R² (R-Squared) | 0.60 |
73
 
@@ -86,22 +86,22 @@ cell-type.
86
 
87
  | Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |
88
  | --- | --- | --- | --- | --- | --- | --- | --- |
89
- | CD4-positive, alpha-beta T cell | 0.90 | 1.79 | 0.61 | 0.87 | 0.14 | 0.83 | 5257.00 |
90
- | CD8-positive, alpha-beta T cell | 0.92 | 2.57 | 0.63 | 0.81 | 0.18 | 0.74 | 2231.00 |
91
- | enterocyte of epithelium of small intestine | 0.94 | 2.44 | 0.68 | 0.91 | 0.41 | 0.88 | 1100.00 |
92
- | B cell | 0.92 | 3.49 | 0.69 | 0.75 | 0.29 | 0.76 | 441.00 |
93
- | plasma cell | 0.87 | 3.50 | 0.67 | 0.77 | 0.23 | 0.86 | 303.00 |
94
- | small intestine goblet cell | 0.88 | 3.21 | 0.69 | 0.82 | 0.44 | 0.84 | 300.00 |
95
- | paneth cell of epithelium of small intestine | 0.90 | 3.67 | 0.69 | 0.78 | 0.45 | 0.85 | 177.00 |
96
- | intestinal tuft cell | 0.91 | 4.03 | 0.67 | 0.69 | 0.39 | 0.79 | 146.00 |
97
- | transit amplifying cell of small intestine | 0.84 | 3.96 | 0.66 | 0.75 | 0.42 | 0.82 | 127.00 |
98
- | fibroblast | 0.74 | 3.36 | 0.74 | 0.87 | 0.57 | 0.90 | 88.00 |
99
- | intestinal crypt stem cell of small intestine | 0.74 | 3.78 | 0.70 | 0.81 | 0.53 | 0.88 | 71.00 |
100
- | mast cell | 0.88 | 4.01 | 0.66 | 0.64 | 0.31 | 0.79 | 65.00 |
101
- | neutrophil | 0.75 | 3.82 | 0.72 | 0.73 | 0.42 | 0.81 | 64.00 |
102
- | monocyte | 0.75 | 3.92 | 0.73 | 0.78 | 0.47 | 0.86 | 61.00 |
103
- | gut endothelial cell | 0.61 | 5.30 | 0.63 | 0.65 | 0.40 | 0.79 | 15.00 |
104
- | intestinal enteroendocrine cell | 0.56 | 5.05 | 0.63 | 0.60 | 0.34 | 0.69 | 12.00 |
105
 
106
  </details>
107
 
 
55
  | Metric | Training Value | Validation Value |
56
  |-------------------------|----------------|------------------|
57
  | Mean Absolute Error | 1.86 | 2.00 |
58
+ | Pearson Correlation | 0.81 | 0.78 |
59
+ | Spearman Correlation | 0.66 | 0.60 |
60
+ | R² (R-Squared) | 0.50 | 0.43 |
61
 
62
  The gene-wise coefficient of variation summarizes how well variation between different genes is
63
  preserved by the generated model expression. This value is usually quite high.
 
66
 
67
  | Metric | Training Value |
68
  |-------------------------|----------------|
69
+ | Mean Absolute Error | 3.56 |
70
+ | Pearson Correlation | 0.87 |
71
  | Spearman Correlation | 0.96 |
72
  | R² (R-Squared) | 0.60 |
73
 
 
86
 
87
  | Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |
88
  | --- | --- | --- | --- | --- | --- | --- | --- |
89
+ | CD4-positive, alpha-beta T cell | 0.92 | 1.78 | 0.61 | 0.87 | 0.14 | 0.83 | 5257.00 |
90
+ | CD8-positive, alpha-beta T cell | 0.92 | 2.70 | 0.62 | 0.81 | 0.18 | 0.74 | 2231.00 |
91
+ | enterocyte of epithelium of small intestine | 0.95 | 2.32 | 0.70 | 0.91 | 0.41 | 0.88 | 1100.00 |
92
+ | B cell | 0.91 | 3.52 | 0.68 | 0.73 | 0.30 | 0.76 | 441.00 |
93
+ | plasma cell | 0.87 | 3.22 | 0.69 | 0.78 | 0.23 | 0.86 | 303.00 |
94
+ | small intestine goblet cell | 0.86 | 3.34 | 0.68 | 0.82 | 0.45 | 0.84 | 300.00 |
95
+ | paneth cell of epithelium of small intestine | 0.89 | 3.54 | 0.71 | 0.80 | 0.44 | 0.84 | 177.00 |
96
+ | intestinal tuft cell | 0.88 | 4.05 | 0.66 | 0.69 | 0.39 | 0.79 | 146.00 |
97
+ | transit amplifying cell of small intestine | 0.82 | 3.67 | 0.69 | 0.77 | 0.41 | 0.82 | 127.00 |
98
+ | fibroblast | 0.75 | 3.46 | 0.74 | 0.86 | 0.58 | 0.90 | 88.00 |
99
+ | intestinal crypt stem cell of small intestine | 0.81 | 3.42 | 0.74 | 0.84 | 0.51 | 0.87 | 71.00 |
100
+ | mast cell | 0.84 | 4.23 | 0.64 | 0.61 | 0.32 | 0.80 | 65.00 |
101
+ | neutrophil | 0.75 | 3.99 | 0.71 | 0.73 | 0.43 | 0.81 | 64.00 |
102
+ | monocyte | 0.78 | 4.24 | 0.71 | 0.77 | 0.47 | 0.86 | 61.00 |
103
+ | gut endothelial cell | 0.61 | 5.45 | 0.63 | 0.64 | 0.39 | 0.79 | 15.00 |
104
+ | intestinal enteroendocrine cell | 0.56 | 5.15 | 0.62 | 0.59 | 0.34 | 0.69 | 12.00 |
105
 
106
  </details>
107